BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927924
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03910.1 | Symbols: GDH3 | glutamate dehydrogenase 3 | chr3:... 1982 0.0
AT5G18170.1 | Symbols: GDH1 | glutamate dehydrogenase 1 | chr5:... 1301 0.0
AT5G07440.1 | Symbols: GDH2 | glutamate dehydrogenase 2 | chr5:... 344 1e-93
> AT3G03910.1 | Symbols: GDH3 | glutamate dehydrogenase 3 | chr3:1006842-1009018
FORWARD LENGTH=1479
Length=1479
Score = 1982 bits (1073), Expect = 0.0
Identities = 1200/1263 (95%), Gaps = 2/1263 (0%)
Strand=Plus/Plus
Query 1 AAAAAAGAGAGAAGAGAGCCATGAATGCTTTAGCAGCAACCAACAGAAACTTCAAGCTAG 60
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 52 AAAGAAGAGAGAAGAAAGCCATGAATGCTTTAGCAGCAACCAACAGAAACTTCAAGCTTG 111
Query 61 CTTCTAGGCTTCTTGGTTTAGACTCAAAGCTCGAGAAAAGTCTTCTCATTCCCTTCAGAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 CTTCTAGGCTTCTTGGTTTAGACTCAAAGCTCGAGAAAAGTCTTCTCATTCCCTTCAGAG 171
Query 121 AGATCAAGGTGGAATGTACCATACCGAAAGATGATGGAACTCTTGCATCATTTGTTGGAT 180
||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||
Sbjct 172 AGATCAAGGTGGAATGTACCATACCAAAAGACGATGGAACTCTAGCATCCTTTGTTGGAT 231
Query 181 TCAGAGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCAGATATCATCCAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TCAGAGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCAGATATCATCCAG 291
Query 241 AGGTCGAACCGGATGAAGTAAACGCTTTGGCTCAACTTATGACATGGAAAACAGCAGTGG 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 AGGTTGAACCGGATGAAGTAAACGCTTTGGCTCAACTTATGACATGGAAAACAGCAGTGG 351
Query 301 CTAAGATACCTTACGGAGGAGCCAAAGGAGGAATCGGTTGTGACCCGAGCCAGCTAAGTA 360
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 352 CTAAGATACCTTATGGAGGAGCCAAAGGAGGAATCGGTTGTGACCCGAGCGAGCTAAGTC 411
Query 361 TCTCAGAGCTGGAACGTTTGACTCGAGTTTTCACTCAGAAGATCCATGATCTCATCGGGA 420
|||||||||| |||||||||||||||||||||||||||||||| || ||||| || ||||
Sbjct 412 TCTCAGAGCTCGAACGTTTGACTCGAGTTTTCACTCAGAAGATTCACGATCTTATTGGGA 471
Query 421 TTCATACCGATGTTCCAGCTCCTGATATGGGAACCGGTCCTCAGACAATGGCTTGGATTC 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TTCATACTGATGTTCCAGCTCCTGATATGGGAACCGGTCCTCAGACAATGGCTTGGATTC 531
Query 481 TTGATGAATACTCAAAATTCCATGGGCACTCGCCTGCTGTGGTGACCGGAAAACCCATTG 540
||||||||||||||||||||||||| || || |||||||| || || |||||||||||||
Sbjct 532 TTGATGAATACTCAAAATTCCATGGACATTCTCCTGCTGTTGTCACTGGAAAACCCATTG 591
Query 541 ATCTCGGTGGATCTCTTGGAAGAGATGCTGCTACAGGAAGAGGAGTGTTATTTGCAACAG 600
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 592 ATCTTGGTGGATCTCTTGGGAGAGATGCTGCTACAGGAAGAGGAGTGTTGTTTGCAACAG 651
Query 601 AAGCTTTACTCAATGAACATGGAAAGAGCATATCTGGACAGCGATTCGCTATCCAGGGTT 660
||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 652 AAGCTTTACTCAACGAACATGGAAAGACCATATCTGGACAGCGATTCGCCATCCAGGGCT 711
Query 661 TTGGAAATGTGGGTTCTTGGGCAGCGAGGTTGATAAGTGAAAAAGGTGGTAAGATTGTGG 720
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 712 TTGGAAATGTGGGTTCTTGGGCAGCGAAGTTGATAAGTGACAAAGGTGGTAAGATTGTGG 771
Query 721 CGGTGAGTGATGTCACAGGAGCAATCAAGAACAAGAATGGAATTGACATCTTGAGTTTGC 780
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 772 CGGTGAGTGATGTCACAGGAGCAATCAAGAACAATAATGGAATTGACATCTTGAGTTTGC 831
Query 781 TGGAGCATGCCGAAGAAAACAGAGGAATCAAAGGGTTTGATGGTGCTGATTCAACCGATC 840
| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 832 TCGAGCATGCTGAAGAAAACAGAGGAATCAAAGGGTTTGATGGTGCTGATTCAATCGATC 891
Query 841 CTGATACGATTCTTGTCGAAGATTGTGATATTCTTGTCCCCGCAGCTCTAGGCGGTGTCA 900
||||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 892 CTGATTCGATTCTTGTCGAAGATTGTGATATTCTTGTCCCTGCAGCTCTAGGGGGAGTCA 951
Query 901 TCAACAGGGAAAATGCAAACGAAATCAAAGCGAAATTCATCATTGAAGGTGCTAATCACC 960
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 952 TCAACAGGGAAAATGCAAACGAAATAAAAGCCAAATTCATCATTGAAGGTGCTAATCACC 1011
Query 961 CAACTGATCCTGAGGCTGATGAGATCTTGAGGAAGAAAGGTGTTGTAATCCTCCCAGATA 1020
||||||||||||||||||| |||||||||| ||||||||||||| | |||||||||||||
Sbjct 1012 CAACTGATCCTGAGGCTGACGAGATCTTGAAGAAGAAAGGTGTTATGATCCTCCCAGATA 1071
Query 1021 TATACGCAAACTCGGGAGGAGTTACTGTAAGTTACTTCGAGTGGGTTCAGAACATACAAG 1080
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1072 TATACGCAAACTCAGGAGGAGTCACTGTAAGTTACTTCGAGTGGGTTCAGAACATACAAG 1131
Query 1081 GGTTCATGTGGGATGAGGAAAAGGTGAATAAGGAGCTAAAGACATATATGACTCGCGGGT 1140
| |||||||||||||||||||||||||||| |||||||||||| || |||||||||||||
Sbjct 1132 GATTCATGTGGGATGAGGAAAAGGTGAATAGGGAGCTAAAGACCTACATGACTCGCGGGT 1191
Query 1141 TCAAAGACTTAAAAGAGATGTGT-ATGACTCACTCATGTGATCTTCGTATGGGAGCTTTC 1199
|||||||||| ||||| |||||| | ||| |||||||||||||| |||||||||||||||
Sbjct 1192 TCAAAGACTTGAAAGAAATGTGTCA-GACGCACTCATGTGATCTCCGTATGGGAGCTTTC 1250
Query 1200 ACTCTTGGTATTAACCGTGTCGCTCAAGCTACCATTATCAGAGGCTGGGGTTCTTGAAAC 1259
|| || |||||||| ||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1251 ACCCTCGGTATTAATCGTGTCGCTCAAGCTACCACTATCAGAGGCTGGGGTTCTTGATAC 1310
Query 1260 CCC 1262
|||
Sbjct 1311 CCC 1313
> AT5G18170.1 | Symbols: GDH1 | glutamate dehydrogenase 1 | chr5:6006039-6008472
FORWARD LENGTH=1593
Length=1593
Score = 1301 bits (704), Expect = 0.0
Identities = 1069/1249 (86%), Gaps = 10/1249 (1%)
Strand=Plus/Plus
Query 5 AAGAGAGAAGAGAGCCATGAATGCTTTAGCAGCAACCAACAGAAACTTCAAGCTAGCTTC 64
|||| |||||| |||||||||||||||||||||||| ||||||||||||||| ||||| |
Sbjct 120 AAGA-AGAAGA-AGCCATGAATGCTTTAGCAGCAACAAACAGAAACTTCAAGTTAGCTGC 177
Query 65 TAGGCTTCTTGGTTTAGACTCAAAGCTCGAGAAAAGTCTTCTCATTCCCTTCAGAGAGAT 124
||||||||||||| | || || ||||||||||||||||||||||| |||||| |||| ||
Sbjct 178 TAGGCTTCTTGGTCTGGATTCTAAGCTCGAGAAAAGTCTTCTCATCCCCTTCCGAGAAAT 237
Query 125 CAAGGTGGAATGTACCATACCGAAAGATGATGGAACTCTTGCATCATTTGTTGGATTCAG 184
||||||||||||||||||||||||||| ||||| || || |||||||| ||||| |||||
Sbjct 238 CAAGGTGGAATGTACCATACCGAAAGACGATGGTACACTAGCATCATTCGTTGGGTTCAG 297
Query 185 AGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCAGATATCATCCAGAGGT 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 298 AGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCAGATATCATCCTGAGGT 357
Query 245 CGAACCGGATGAAGTAAACGCTTTGGCTCAACTTATGACATGGAAAACAGCAGTGGCTAA 304
|| ||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 358 TGATCCGGATGAAGTGAACGCATTGGCTCAGCTCATGACATGGAAAACAGCAGTGGCTAA 417
Query 305 GATACCTTACGGAGGAGCCAAAGGAGGAATCGGTTGTGACCCGAGCCAGCTAAGTATCTC 364
||| |||||||||||||| |||||||| || |||||||| || ||| |||| ||||||||
Sbjct 418 GATTCCTTACGGAGGAGCTAAAGGAGGGATTGGTTGTGATCCTAGCAAGCTCAGTATCTC 477
Query 365 AGAGCTGGAACGTTTGACTCGAGTTTTCACTCAGAAGATCCATGATCTCATCGGGATTCA 424
||||| || || |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 478 CGAGCTCGAGCGGTTGACTCGAGTTTTCACTCAGAAGATTCATGATCTCATTGGGATTCA 537
Query 425 TACCGATGTTCCAGCTCCTGATATGGGAACCGGTCCTCAGACAATGGCTTGGATTCTTGA 484
||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 538 TACTGATGTTCCAGCTCCAGATATGGGCACTGGTCCTCAGACAATGGCTTGGATTCTTGA 597
Query 485 TGAATACTCAAAATTCCATGGGCACTCGCCTGCTGTGGTGACCGGAAAACCCATTGATCT 544
||||||||| || || ||||| |||||||||| || ||||| |||||||||||||||||
Sbjct 598 TGAATACTCTAAGTTTCATGGATACTCGCCTGCAGTTGTGACTGGAAAACCCATTGATCT 657
Query 545 CGGTGGATCTCTTGGAAGAGATGCTGCTACAGGAAGAGGAGTGTTATTTGCAACAGAAGC 604
|||||||| || || ||||| || ||||| |||||||||||| | |||| || |||||
Sbjct 658 TGGTGGATCGCTAGGGAGAGACGCGGCTACTGGAAGAGGAGTGATGTTTGGTACCGAAGC 717
Query 605 TTTACTCAATGAACATGGAAAGAGCATATCTGGACAGCGATTCG-CTATCCAGGGTTTTG 663
||| || || || || ||||||| |||||| || ||||| || | | |||||||| ||||
Sbjct 718 TTTGCTTAACGAGCACGGAAAGACCATATCAGGGCAGCGTTTTGTC-ATCCAGGGATTTG 776
Query 664 GAAATGTGGGTTCTTGGGCAGCGAGGTTGATAAGTGAAAAAGGTGGTAAGATTGTGGCGG 723
| ||||||||||||||||| || | | ||||||||||||| ||||| |||||||| || |
Sbjct 777 GTAATGTGGGTTCTTGGGCGGCAAAGCTGATAAGTGAAAAGGGTGGGAAGATTGTTGCCG 836
Query 724 TGAGTGATGTCACAGGAGCAATCAAGAACAAGAATGGAATTGACATCTTGAGT-TTGCTG 782
||||||| | || |||||||||||||||||| |||| || || ||| | | |||||
Sbjct 837 TGAGTGACATTACCGGAGCAATCAAGAACAAGGATGGTATCGATATCCCG-GCCTTGCTC 895
Query 783 GAGCATGCCGAAGAAAACAGAGGAATCAAAGGGTTTGATGGTGCTGATTCAACCGATCCT 842
||||| | ||||| ||||||| ||||||||||||||||||| ||| | | ||||||
Sbjct 896 AAGCATACTAAAGAACACAGAGGTGTCAAAGGGTTTGATGGTGCAGATCCGATCGATCCA 955
Query 843 GA-TACGATTCTTGTCGAAGATTGTGATATTCTTGTCCCCGCAGCTCTAGGCGGTGTCAT 901
| | | || || || || ||||||||||| || ||||| ||||| || || ||||||||
Sbjct 956 AACTCC-ATACTGGTTGAGGATTGTGATATCCTCGTCCCTGCAGCACTTGGTGGTGTCAT 1014
Query 902 CAACAGGGAAAATGCAAACGAAATCAAAGCGAAA-TTCATCATTGAAGGTGCTAATCACC 960
||||||||| ||||| || || || ||||| ||| |||||||| |||| |||||||| |
Sbjct 1015 CAACAGGGAGAATGCGAATGAGATTAAAGC-AAAGTTCATCATAGAAGCAGCTAATCATC 1073
Query 961 CAACTGATCCTGAGGCTGATGAGATCTTGAGGAAGAAAGGTGTTGTAATCCTCCCAGATA 1020
|||||||||| || || ||||||||| | || ||||||||||| || || ||||| || |
Sbjct 1074 CAACTGATCCGGACGCGGATGAGATCCTAAGTAAGAAAGGTGTGGTTATTCTCCCGGACA 1133
Query 1021 TATACGCAAACTCGGGAGGAGTTACTGTAAGTTACTTCGAGTGGGTTCAGAACATACAAG 1080
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1134 TATATGCAAACTCTGGAGGAGTCACTGTAAGTTACTTCGAATGGGTTCAGAACATTCAAG 1193
Query 1081 GGTTCATGTGGGATGAGGAAAAGGTGAATAAGGAGCTAAAGACATATATGACTCGCGGGT 1140
| || |||||||| || || |||||||| | ||||||||||| || ||||||||| |
Sbjct 1194 GCTTTATGTGGGAGGAAGAGAAGGTGAACGATGAGCTAAAGACTTACATGACTCGCTCTT 1253
Query 1141 TCAAAGACTTAAAAGAGATGTGTATGACTCACTCATGTGATCTTCGTATGGGAGCTTTCA 1200
|||| ||||| ||||||||||| | |||||||| || ||||| || |||||||||||||
Sbjct 1254 TCAAGGACTTGAAAGAGATGTGCAAAACTCACTCTTGCGATCTCCGGATGGGAGCTTTCA 1313
Query 1201 CTCTTGGTATTAACCGTGTCGCTCAAGCTACCATTATCAGAGGCTGGGG 1249
| || ||| |||| ||||| ||||||||||||||| |||||||||||||
Sbjct 1314 CACTCGGTGTTAATCGTGTGGCTCAAGCTACCATTCTCAGAGGCTGGGG 1362
> AT5G07440.1 | Symbols: GDH2 | glutamate dehydrogenase 2 | chr5:2355937-2358194
FORWARD LENGTH=1634
Length=1634
Score = 344 bits (186), Expect = 1e-93
Identities = 476/613 (78%), Gaps = 31/613 (5%)
Strand=Plus/Plus
Query 8 AGAGAAGAGAGCCATGAATGCTTTAGCAGCAACCAACAGAAACTTCAAGCT-A-GCTTCT 65
|||||||| | |||||||||||||||| ||||| |||||||||||| | | | || |||
Sbjct 205 AGAGAAGA-AACCATGAATGCTTTAGCTGCAACAAACAGAAACTTC-CG-TCATGCATCT 261
Query 66 AGGCTTCTTGGTTTAGACTCAAAGCTCGAGAAAAGTCTTCTCATTCCC-TTCAGAGAGAT 124
| | || ||||| || || ||| |||||| ||||||| | | |||| || ||||| ||
Sbjct 262 CGAATCCTGGGTTTGGATTCGAAGATCGAGAGAAGTCTTATGA-TCCCATTTAGAGAAAT 320
Query 125 CAAGGTGGAATGTACCATACCGAAAGATGATGGAACTCTTGCATCATTTGTTGGATTCAG 184
|||||| || ||||| || || ||||| ||||| ||||| | |||| | ||||| ||
Sbjct 321 CAAGGTTGAGTGTACGATTCCTAAAGACGATGGCACTCTGGTTTCATACATCGGATTTAG 380
Query 185 AGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCAGATATCATCCAGAGGT 244
|||||||| |||||||| | || ||||||||||||||||||||||||||||| |||||
Sbjct 381 GGTTCAACATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAGGT 440
Query 245 CGAACCGGATGAAGTAAACGCTTTGGCTCAACTTATGACATGGAAAACAGCAGTGGCTAA 304
|| || |||||||| ||||| | ||||| || ||||| ||||| || || || || |
Sbjct 441 TGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACTGCTGTAGC-A- 498
Query 305 GATA--CCTTACGGAGGAGCCAAAGGAGGAATCGGTTGT-GACC-CGAGCCAGCTA-AGT 359
|||| || || || || || ||||| ||||| || ||| | || || | | || |||
Sbjct 499 GATATTCCATATGGTGGTGCTAAAGGTGGAATTGGATGTAGTCCTCGTG--A-CTTGAGT 555
Query 360 ATCTCAG--AGCTGGA-ACGTTTGACTCGAGT-TTTCACTCAGAAGATCCATGATCTCAT 415
| | || |||| || | ||| |||||| || ||| || |||||||| |||||||| ||
Sbjct 556 -T-TGAGCGAGCTTGAGAGGTT-GACTCGTGTGTTT-ACACAGAAGATTCATGATCTTAT 611
Query 416 CGGGATTCATACCGATGTTCCAGCTCCTGATATGGGAACCGGTC-CTCAGACAATGGCTT 474
||| |||||||||||||| || |||||||||||||| || | |||| || |||||||
Sbjct 612 CGGTATTCATACCGATGTGCCTGCTCCTGATATGGGCACTAA-CGCTCAAACCATGGCTT 670
Query 475 GGATTCTTGATGAATACTCAAAATTCCATGGGCACTCGCCTGCTGTGGTGACCGGAAAAC 534
||||||||||||| ||||| || || ||||| || || |||||||| || || ||||| |
Sbjct 671 GGATTCTTGATGAGTACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGC 730
Query 535 CCATTGATCTCGGTGGATCTCTT-GGAAGAGATGCTGCTACAGGAAGAGGAGT-GTTATT 592
|||||||||| ||||| || || || || || ||||| ||||| | || || || |||
Sbjct 731 CCATTGATCTTGGTGGTTCA-TTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGT-ATT 788
Query 593 TGCAACAGAAGCT 605
||| || ||||||
Sbjct 789 TGCCACCGAAGCT 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62750681250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5