BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927927

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G04485.1 | Symbols:  | other RNA | chr3:1198114-1200104 FORW...  58.4    3e-08


> AT3G04485.1 | Symbols:  | other RNA | chr3:1198114-1200104 FORWARD 
LENGTH=878
Length=878

 Score = 58.4 bits (31),  Expect = 3e-08
 Identities = 31/31 (100%), Gaps = 0/31 (0%)
 Strand=Plus/Plus

Query  110  AGCTGATCAGTACTTGGATCAGAAGATCTCA  140
            |||||||||||||||||||||||||||||||
Sbjct  353  AGCTGATCAGTACTTGGATCAGAAGATCTCA  383



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11712385517


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5