BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927934
Length=853
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03980.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1327 0.0
AT3G04000.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 193 3e-48
> AT3G03980.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr3:1031742-1033207 FORWARD LENGTH=983
Length=983
Score = 1327 bits (718), Expect = 0.0
Identities = 811/856 (95%), Gaps = 6/856 (1%)
Strand=Plus/Plus
Query 1 CTCATTGAATTCGAATCGTTATGGCTACACAGTCATCAATTTCGCAACCGCCGCTTCCAC 60
|||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||| |
Sbjct 25 CTCATTGAATTCAAATCGTTATGTCTACACATTCATCAATCTCGCAACCGCCGCTTCCTC 84
Query 61 TCGCCGGAAGAGTCGCCATTGTCACCGGCTCTTCTCGTGGTATTGGTCGAGCGATAGCGA 120
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 85 TCGCCGGAAGAGTCGCCATTGTCACCGGCTCTTCCCGTGGTATTGGCCGAGCGATAGCGA 144
Query 121 TCCACTTAGCTGAACTCGGTGCGAGGATTGTTATCAACTACACCTCTAAAGCCGCAGACG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 TCCACTTAGCTGAACTCGGTGCGAGGATTGTTATCAACTACACCTCTAAAGCCGCAGACG 204
Query 181 CCGAGCGTGTCGCGTCGGAGATCAATGATTTTCCAGTTAGGGAAGAAATCACTGGAAAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 205 CCGAGCGTGTCGCGTCGGAGATCAATGATTTTCCAGTTAGGGAAGAAATCACTGGAAAGG 264
Query 241 GACCAAGAGCTATTGTGGTTCAGGCCAATGTCTCCGAGCCAAGTCAGGTGAAATCGATGT 300
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||
Sbjct 265 GACCAAGAGCTATTGTGGTTCAGGCCAATGTCTCTGAGCCAAGCCAGGTTAAATCAATGT 324
Query 301 TTGATGCGGCGGAGCGTGCCTTTGAAGCGCCGGTTCACATTCTGGTTAACTCTGCTGGAA 360
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 325 TTGATGCGGCGGAGAGTGCCTTTGAAGCGCCGGTTCACATTCTGGTTAACTCTGCTGGGA 384
Query 361 TCCTCGATCCTAAGTACCCTGCGATTGCAGACACATCAGTCGAAGATTTCGATCGCACCT 420
| |||||||| ||||||||| |||| |||||||||||||||||||||||||||| || |
Sbjct 385 TTCTCGATCCAAAGTACCCTACGATCGCAGACACATCAGTCGAAGATTTCGATCATACGT 444
Query 421 TCAGTGTCAATACAAAAGGAGCGTTTCTGTGTAGCAAGGAAGCTGCCAATAGGCTAAAAC 480
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 445 TCAGTGTCAACACAAAAGGAGCGTTCCTGTGTAGCAAGGAAGCTGCCAATAGGCTAAAAC 504
Query 481 AAGGAGGTGGTGGTCGGATCATACTCCTGACATCTTCC-ACGACCCGATCCTTGA-GACA 538
||||||||||||||||||||||||| |||||||||||| | ||| ||||| || | | ||
Sbjct 505 AAGGAGGTGGTGGTCGGATCATACTTCTGACATCTTCCCA-GACTCGATCTTTAAAGCCA 563
Query 539 GGGCTTTGGTGCCTATGCAGCATCAAAAGCAGCTGTGGAAACTATGGTCAAGATTCTTGC 598
||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 564 GGG-TTTGGTGCCTATGCCGCATCAAAGGCAGCTGTGGAAACTATGGTCAAGATTCTTGC 622
Query 599 AAAAGAGCTCAAAGGAACAGGAATCACTGCAAACTGTGTTGCTCCAGGACCCATCGCCAC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 AAAAGAGCTCAAAGGAACAGGAATCACTGCAAACTGTGTTGCTCCAGGACCCATCGCCAC 682
Query 659 TGAGATGTTCTTTGATGGAAAAACCCCGGAGTTGGTGGAAAAGATAGCCGCAGAGTCCCC 718
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 683 TGAGATGTTCTTTGATGGAAAGACCCCAGAGTTGGTGGAAAAGATAGCCGCAGAGTCTCC 742
Query 719 CTTTGGGAGGGTCGGTGAAGCCAGAGACGTGGTGCCTCTTGTTGGATTCTTGGCTGGTGA 778
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 743 CTTTGGGAGGGTCGGCGAAGCCAAAGACGTGGTGCCTCTTGTTGGATTCTTGGCTGGTGA 802
Query 779 TGGTGGTGAATGGGTGAATGGTCAAATCATTCCTGTTAATGGTGGATATGTGTAAAAG-G 837
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 803 CGGTGGTGAATGGGTCAATGGTCAAATCATTCCTGTTAATGGTGGATATGTATAAAAGAG 862
Query 838 TTTGGTCTTGAGAGGA 853
|| | |||||||||||
Sbjct 863 TTCG-TCTTGAGAGGA 877
> AT3G04000.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr3:1035500-1036672 FORWARD LENGTH=1056
Length=1056
Score = 193 bits (104), Expect = 3e-48
Identities = 437/593 (74%), Gaps = 42/593 (7%)
Strand=Plus/Plus
Query 252 ATTGTGGTTCAGGCCAATGTCTCCGAGCCAAGTCAGGTGAAA-TCGATGTTT-GATGCGG 309
|||||||| |||| || |||| ||||| || ||||| ||| ||| | ||| |||| ||
Sbjct 235 ATTGTGGTGAAGGCTGATATCTCAGAGCCGAGCCAGGT-AAAGTCGCT-TTTCGATGAGG 292
Query 310 CGGAGCGTGCCTTTGAAG-CGCCGGTTCACATTC-TGGTTAACTCTGCTGG-AAT-CCTC 365
| ||||| | ||| | || |||||||||| | || |||||||||| || || || | |
Sbjct 293 CAGAGCGAGTCTTCG-AGTCGCCGGTTCATA-TCTTGGTTAACTCAGC-GGCTATAGC-C 348
Query 366 GATCCTAAGT-A-CCCTGCGAT-TGCAGACACATCAGTCGAAGATTTCGATCGCACCT-T 421
|||||||| | | || | || | |||||| ||||| ||| ||| ||||||| | |
Sbjct 349 GATCCTAA-TCATTCC-ACTATCT-CAGACATGTCAGTAGAACTTTTTGATCGCA-TTAT 404
Query 422 CAGTGTCAATACAAAAGGAGCGTTTCTGTGTAGCAAG-GAAGCTGCCAATAGGCTAAAAC 480
|||||| || |||| ||| |||||| | ||| || || |||||||| |||||||||||||
Sbjct 405 CAGTGTGAACACAAGAGGTGCGTTTATTTGT-GCTAGAGAAGCTGCGAATAGGCTAAAAC 463
Query 481 AAGGAGGTGGTGGTCGGATCATACTCCTGACATCTTCCAC-GACCCGATCCTT-GAGACA 538
||||| ||||| ||||| || ||||| || | | ||| | | | |||| | |||
Sbjct 464 GTGGAGGCGGTGGCCGGATAATTCTCCTCTCAACAT-CACTGGTTCAAACCTTAAATACA 522
Query 539 GGGCTTTGG-TGCCTATGCAGCATCAAAAGCAGCTGTGGAAACTATGGTCAAGATTCTTG 597
|| ||| | | || | || ||||| ||||| || ||| | |||| |||||||||||
Sbjct 523 -AACTATGGCT-CATACACGGCTTCAAAGGCAGCCGTAGAAGCCATGGCCAAGATTCTTG 580
Query 598 CAAAAGAGCTCAAAGGAACAG-GAATCACTGCAAACTGTGTTGCTCCAGGACCCATCGCC 656
||||||||||||||||||||| || |||| | ||||||||| |||| || ||| |||||
Sbjct 581 CAAAAGAGCTCAAAGGAACAGAGA-TCACAGTTAACTGTGTTTCTCCGGGTCCCGTCGCC 639
Query 657 ACTGAGATGTTCTTTGAT-GGAAAAACCCCGGAG-TTGGTG-GAAAAGATA-GCCGCAGA 712
|| || ||||| || | ||| | | ||| ||| || |||| | || | | ||||
Sbjct 640 ACAGAAATGTT-TTACACAGGATTGAGCAATGAGATTGTTGAGAAA-GTTAAGTCACAGA 697
Query 713 GTCCCCCTTTGGGAGGGTCGGTGA-AGCCAGAGACGTGGTGCCTCTTGTTGGATTCTTGG 771
| ||||| ||| ||||||| | ||| |||| | | ||| ||||||| ||||| |
Sbjct 698 A-CTTA-TTTGGTAGGATCGGTGAGA-CCAAAGACATCGCACCTGTTGTTGGGTTCTTAG 754
Query 772 CTGGTGATGGTGGTGAATGGGTGAATGGTCAAATCATTCCTGT-TAATGGTGG 823
| |||||| ||| |||||| | || |||||| |||| | || |||||||||
Sbjct 755 CCAGTGATGCTGGCGAATGGATCAACGGTCAAGTCAT-CATGGCTAATGGTGG 806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41593873716
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5