BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927965

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G45290.1 | Symbols:  | Transketolase | chr2:18672682-1867590...   248    2e-65
  AT3G60750.1 | Symbols:  | Transketolase | chr3:22453719-2245715...   165    2e-40


> AT2G45290.1 | Symbols:  | Transketolase | chr2:18672682-18675906 
FORWARD LENGTH=2598
Length=2598

 Score =  248 bits (134),  Expect = 2e-65
 Identities = 179/198 (90%), Gaps = 13/198 (7%)
 Strand=Plus/Plus

Query  33    GGTATGGGAGCTATCTGCAACGGCATTGCCCTTCACAGCCCCGGTTTTA-CCACATACTG  91
             ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct  1523  GGTATGGGAGCTATCTGCAACGGCATTGCCCTTCACAGCCCCGGTTTTATCC-CTTACTG  1581

Query  92    CGCAACTTTCTTTTTG-TT--T-AC--T-T---A-CTACAGTGAGAATCTCGGCTTTGTC  140
             ||||||||||||| || ||  | ||  | |   | || || |||||||||||||||||||
Sbjct  1582  CGCAACTTTCTTTGTGTTTACTGACTATATGAGAGCTGCAATGAGAATCTCGGCTTTGTC  1641

Query  141   TGAAGCTTCTGTTATATACGTTATGACCCATGACTCCATTGGTCTTGGAGAAGATGGACC  200
             |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1642  TGAAGCTGGTGTTATATACGTTATGACCCATGACTCCATTGGTCTTGGAGAAGATGGACC  1701

Query  201   AACCCACCAACCCATCGA  218
             ||||||||||||||||||
Sbjct  1702  AACCCACCAACCCATCGA  1719


> AT3G60750.1 | Symbols:  | Transketolase | chr3:22453719-22457152 
FORWARD LENGTH=2839
Length=2839

 Score =  165 bits (89),  Expect = 2e-40
 Identities = 168/204 (82%), Gaps = 14/204 (7%)
 Strand=Plus/Plus

Query  24    GGGATCTACGGTATGGGAGCTATCTGCAACGGCATTGCCCTTCACAGCCCCGGTTTTA-C  82
             |||| | |||| |||||||| |||||||| |||||||||||||||||||||||| ||| |
Sbjct  1745  GGGAGC-ACGGAATGGGAGCCATCTGCAATGGCATTGCCCTTCACAGCCCCGGTCTTATC  1803

Query  83    CACATACTGCGCAACTTTCTTTTTGTTTA-C--TTAC-T-ACA---G---TGAGAATCTC  131
             | | ||||| || || |||||| | || | |   ||| | | |   |   ||||||||||
Sbjct  1804  C-CTTACTGTGCGACGTTCTTTGTCTTCACCGACTACATGAGAGGTGCCATGAGAATCTC  1862

Query  132   GGCTTTGTCTGAAGCTTCTGTTATATACGTTATGACCCATGACTCCATTGGTCTTGGAGA  191
              |||||||||||||||  |||||| || |||||||||||||| |||||||||||||||||
Sbjct  1863  AGCTTTGTCTGAAGCTGGTGTTATCTATGTTATGACCCATGATTCCATTGGTCTTGGAGA  1922

Query  192   AGATGGACCAACCCACCAACCCAT  215
             ||||||||||||||| || |||||
Sbjct  1923  AGATGGACCAACCCATCAGCCCAT  1946



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11762653266


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5