BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927977
Length=613
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04330.1 | Symbols: | Kunitz family trypsin and protease in... 691 0.0
AT3G04320.1 | Symbols: | Kunitz family trypsin and protease in... 571 2e-162
> AT3G04330.1 | Symbols: | Kunitz family trypsin and protease
inhibitor protein | chr3:1145757-1146365 FORWARD LENGTH=609
Length=609
Score = 691 bits (374), Expect = 0.0
Identities = 493/545 (90%), Gaps = 29/545 (5%)
Strand=Plus/Plus
Query 74 TGAGGGTAACTACGTGGTTTATGATGGTGAAGGAGATCAGGTTAAGCCCAACGTTCCGTA 133
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 69 TGAGGGTAACTACGTGGTTTATGACGGCGAAGGAGATCAGGTTAAGCCCAACGTTCCGTA 128
Query 134 CTACATCAGCTTCATGACGTCGGATTACAGCATGTGGATCTGCCGAAAGAAAT-G-G--- 188
||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 129 CTACATCAGCTTCATGACGTCGGATTACAACATGTGGATCTGCCGAAAGAAATGGAGATC 188
Query 189 ---TG--CCC-A--------CA-A-CAACCGTTAATGGTCACTCATCCAAATATAACAGC 232
|| ||| | || | ||||||||||||||||||||||||||||| ||||
Sbjct 189 TAATGATCCCAACTCCTGCCCACAGCAACCGTTAATGGTCACTCATCCAAATATGGCAGC 248
Query 233 ACCCACACCGGTTATGTTTGTATTATCAAACACATCAGATACAGTCGTACGTGAATCAAC 292
||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||| |
Sbjct 249 ACCCACACCGGTTATGTTTGTGTTATCAAACAAATCAGAGACAGTCGTACGTGAATCAGC 308
Query 293 CAAACTTAAGATTAAGTTCGTAGATCCTCTTCAGTGCGGTGAATCCGGGTTTTGGAGAGT 352
|||||| |||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 309 CAAACTCAAGATTAAGTTCGTAGATCCCCGTCCCTGCGGTGAATCCGGGTTTTGGAGAGT 368
Query 353 AGTTCAGAGAAAC-TCTTTAGAAGGTGAAGTTGTCCTCAACGGATCTGAATCTACGTCAG 411
||||||||| ||| |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 369 AGTTCAGAG-AACTTCTTCAGAAGGTGAAGTAGTCCTCAACGGATCTGAATCTACGTCAG 427
Query 412 ACAATGCCAGTACGTTCACCATCGAGCAAACTGACCAATACTACAAGTTAACTTTCGGTG 471
||||||||||||||||| |||||||||||||| || ||||||||||||| ||||||||||
Sbjct 428 ACAATGCCAGTACGTTCGCCATCGAGCAAACTAACGAATACTACAAGTTCACTTTCGGTG 487
Query 472 ACGG---TGACTATCTAACGACTATCAGTTTATCCAACGACGATTATCCAATATATAGGT 528
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 488 ACGGCCCTGACTATCTAACGACTATCAGTTTATCCAACGA---TTATCCAATATATAGGT 544
Query 529 TGTTATCCAAGAGGTTCTCTGGAGAGATGGAGATTTATTTCTACAAGAACCTGACTATGG 588
|||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 545 TGTTATCCAAGAAGTTCTCTGGAGAAATGGAGATTTATTTCTACAAGAACCTTACTATGG 604
Query 589 GTTAA 593
|||||
Sbjct 605 GTTAA 609
> AT3G04320.1 | Symbols: | Kunitz family trypsin and protease
inhibitor protein | chr3:1143791-1144661 FORWARD LENGTH=871
Length=871
Score = 571 bits (309), Expect = 2e-162
Identities = 487/567 (86%), Gaps = 36/567 (6%)
Strand=Plus/Plus
Query 73 GTGAGGGTAACTACGTGGTTTATGATGGTGAAGGAGATCAGGTTAAGCCCAACGTTCCGT 132
||||||||||| |||| |||||||| || |||||||||| |||||||||||||||||| |
Sbjct 95 GTGAGGGTAACGACGTAGTTTATGACGGCGAAGGAGATCCGGTTAAGCCCAACGTTCCAT 154
Query 133 ACTACATCAGCTTCATGACGTCGGATTACAGCATGTGGATCTGCCGAAAG-AA-AT-G-- 187
| |||||||||||||||||||||||||||| ||||||||||||||||| | || || |
Sbjct 155 ATTACATCAGCTTCATGACGTCGGATTACAACATGTGGATCTGCCGAATGCAATATGGAT 214
Query 188 -----G-----------TGCCCACAACAACCGTTAATGGTCACTCATCCAAATATAACAG 231
| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 215 CTACTGATCCCAACTCATGCCCACAACAACCGTTAATGGTCACTCATCCAAATTTAGCAG 274
Query 232 CACCCACACCGGTTATGTTTGTATTATCAAACACA-TCAGATACAGTCGTACGTGAATCA 290
|||| ||||| ||||||||||||||| |||||| | |||||| |||||||||||||||
Sbjct 275 CACCAACACCAGTTATGTTTGTATTAGCAAACA-AGTCAGAT---GTCGTACGTGAATCA 330
Query 291 ACCAAACTTAAGATTAAGTTCGTAGATCCTCTTCAGTGCGGTGAATCCGGGTTTTGGAGA 350
|||||||||||||||||||||||| ||| | |||||| ||| ||||||||||||||| |
Sbjct 331 GCCAAACTTAAGATTAAGTTCGTAGGTCCCCGTCAGTGTGGTAAATCCGGGTTTTGGAAA 390
Query 351 GTAGTTCAGAGAAACTCTTTAGAAGGTGAAGT-TGTCCTCAACGGATCTGAATCTACGTC 409
||||||||||||||||||| |||||||||||| | |||||||||||||| |||||| |||
Sbjct 391 GTAGTTCAGAGAAACTCTTCAGAAGGTGAAGTAT-TCCTCAACGGATCTAAATCTATGTC 449
Query 410 AGACAATGCCAGTACGTTCACCATCGAGC-AAACTGACCAATACTACAAGTTAACTTTCG 468
| |||||| ||| || ||| ||||| | | ||||| || ||||||||||||| |||||||
Sbjct 450 ACACAATGACAGCACATTCGCCATCCA-CAAAACTAACGAATACTACAAGTTTACTTTCG 508
Query 469 GTGACGGTGACTATCTAACGACTATCAGT-TTATCCAACGACGATTATCCAATATATAGG 527
||||||||||||||| ||||||||||||| | | |||||||| ||||| |||||||||
Sbjct 509 GTGACGGTGACTATCCAACGACTATCAGTATGA-CCAACGAC---TATCCGATATATAGG 564
Query 528 TTGTTATCCAAGAGGTTCTCTGGAGAGATGGAGATTTATTTCTACAAGAACCTGACTATG 587
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 565 TTGTTATCGAAGAGGTTATCTGGAGAGATGGAGATTTATTTCTACAAGAACCTGACTACG 624
Query 588 GGTTAAGCCGAAA-TGTTCCGTTTTCA 613
|| ||| | ||| ||||| |||||||
Sbjct 625 AGTGAAGGCTAAAATGTTCTGTTTTCA 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29537678436
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5