BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927985

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG01130.1 | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-1292...   309    7e-84


> ATCG01130.1 | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-129244 
REVERSE LENGTH=5361
Length=5361

 Score =  309 bits (167),  Expect = 7e-84
 Identities = 173/176 (98%), Gaps = 0/176 (0%)
 Strand=Plus/Plus

Query  9     ttttttGATTGGATGGGAATGAATGAAGAAATACTAAATCATCGTATAACAAATTTTGAA  68
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  4189  TTTTTTGATTGGATGGGAATGAATGAAGAAATACTAAATCAGCGTATAACAAATTTTGAA  4248

Query  69    ttttttttCTTTCCGGAATTTTTCTTATTTTCTAGTACATATAAAATGAAACCGTGGGTC  128
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  4249  TTTTTTTTCTTTCCGGAATTTTTCTTATTTTCTAGTACATATAAAATGAAACCATGGGTC  4308

Query  129   ATACCAATCAAATTACTTCTTTTAAATTTTAATGAAAACATAAATGTTaaaaaaaa  184
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  4309  ATACCAATCAAATTACTTCTTTTAAATTTTAATGAAAACATAAATGTTAATAAAAA  4364



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10505959541


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5