BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927987

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G04400.1 | Symbols: emb2171 | Ribosomal protein L14p/L23e fa...   909    0.0  


> AT3G04400.1 | Symbols: emb2171 | Ribosomal protein L14p/L23e 
family protein | chr3:1167276-1168659 FORWARD LENGTH=837
Length=837

 Score =  909 bits (492),  Expect = 0.0
 Identities = 516/528 (98%), Gaps = 0/528 (0%)
 Strand=Plus/Plus

Query  1    ACCCTCTCGGCGCTGTCATTGAAACTCTTCCAAGGAGAGAGCTGCTACTCTGCAACCATG  60
            ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  7    ACCCTCTCGGCGCTGCCATTGAAACTCTTTCAAGGAGAGAGCTGCTACTCTGCAACCATG  66

Query  61   TCGAAGCGAGGAAGAGGAGGAACCTCTGGTAACAAGTTCAGGATGTCACTGGGTCTTCCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  67   TCGAAGCGAGGAAGAGGAGGAACCTCTGGTAACAAGTTCAGGATGTCACTGGGTCTTCCA  126

Query  121  GTGGCAGCCACAGTGAACTGTGCTGACAACACAGGAGCTAAGAACCTTTACATCATTTCG  180
            ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  127  GTGGCAGCCACTGTGAACTGTGCTGACAACACCGGAGCTAAGAACCTTTACATCATTTCG  186

Query  181  GTTAAAGGAATCAAGGGTCGTCTTAACCGTTTGCCATCAGCATGTGTTGGTGATATGGTT  240
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  187  GTTAAAGGAATCAAGGGTCGTCTTAACCGTTTGCCATCAGCGTGTGTTGGTGATATGGTT  246

Query  241  ATGGCTACTGTTAAGAAAGGTAAGCCTGATCTCCGTAAGAAGGTGCTTCCTGCTGTCATT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  247  ATGGCTACTGTTAAGAAAGGTAAGCCTGATCTCCGTAAGAAGGTGCTTCCTGCTGTCATT  306

Query  301  GTTAGGCAGAGGAAGCCTTGGCGCCGAAAGGACGGTGTCTTCATGTATTTCGAAGATAAT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  307  GTTAGGCAGAGGAAGCCTTGGCGCCGAAAGGACGGTGTCTTCATGTATTTCGAAGATAAT  366

Query  361  GCTGGTGTCATTGTCAATCCCAAGGGTGAAATGAAAGGATCTGCAATCACTGGACCAATC  420
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  367  GCTGGTGTCATTGTCAATCCCAAGGGTGAAATGAAAGGATCTGCTATCACTGGACCAATC  426

Query  421  GGAAAGGAGTGTGCTGATCTCTGGCCAAGAATTGCAAGTGCTGCAAACGCCATCGTTTAA  480
            |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct  427  GGAAAGGAGTGTGCTGATCTGTGGCCAAGAATCGCAAGTGCTGCGAACGCCATCGTTTAA  486

Query  481  GCAAGCTTGAGATCTCTATATTTTGTGTTAAACGTTTTGCATTATCTC  528
            ||||||||||||||||||| ||||||||| ||||||| ||||||||||
Sbjct  487  GCAAGCTTGAGATCTCTATGTTTTGTGTTGAACGTTTAGCATTATCTC  534



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25267775941


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5