BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927989
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04460.1 | Symbols: PEX12, ATPEX12, APM4 | peroxin-12 | chr3... 1958 0.0
> AT3G04460.1 | Symbols: PEX12, ATPEX12, APM4 | peroxin-12 | chr3:1186484-1189478
FORWARD LENGTH=1723
Length=1723
Score = 1958 bits (1060), Expect = 0.0
Identities = 1166/1218 (96%), Gaps = 4/1218 (0%)
Strand=Plus/Plus
Query 7 GGAGGAAGAAGAAGATGTTGTTTCAGGTGGGAGGTGAAGGCACACGCCCCACCTTCTTTG 66
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 GGAGGAGGAAGAAGATGTTGTTTCAGGTGGGAGGTGAAGGCACACGCCCCACCTTCTTTG 203
Query 67 AGATGGCTGCTGCTCAGCAACTCCCGGCTAGCCTTCGCGCCGCTCTCACCTATTCCCTCG 126
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 204 AGATGGCTGCTGCTCAGCAACTTCCTGCTAGCCTTCGCGCCGCTCTCACCTATTCCCTCG 263
Query 127 GCGTTTTTGCTTTGAGACGATCGTTTCTCCATAAGATTTTAGATTATGAGGATGAATTCT 186
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 264 GCGTTTTTGCTTTGAGACGATCGTTTCTCCATAAGATTTTAGACTATGAGGATGAATTCT 323
Query 187 TTGCTGCTCTCATGCTTATTCTTGAAGGACACAGCTTACGAACCACAGATGCTTCCTTTG 246
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 324 TTGCTGCTCTGATGCTTATTCTTGAAGGACACAGCTTACGAACCACAGATGGTTCCTTTG 383
Query 247 CTGAATCATTGTATGGTTTGAGGAGGAAATCGGTGAGATTGAGATTGAGGAAAGACAGTG 306
||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct 384 CTGAATCATTGTATGGTTTAAGGAGGAAATCAGCGAGATTGAGATTGAGGAAAGACAGTG 443
Query 307 TCAGGAAGGATTCCGGCGAAGAAGTTCAACATTCTGGTTTAGAGAAGCGCCAGAGAATCC 366
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 444 CCAGGAAGGATTCTAGCGAAGAAGTTCAACATTCTGGTTTAGAGAAGCGTCAGAGAATCC 503
Query 367 TTTCTGTTGTGTTTCTGGTTGTATTACCGTATTTCAAGTCAAAATTGCATGCTATCTATA 426
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 504 TTTCTGTTGTGTTTCTGGTTGTGTTACCGTATTTCAAGTCAAAATTGCATGCTATATATA 563
Query 427 ATAAAGAAAGAGAAGCTAGGCTCCGGGAAAGTTTATGGGGAGCAGAGGATCCAGGATTTG 486
||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 564 ATAAAGAAAGAGAGGCTAGGCTCCGGGAAAGTTTATGGGGTGCAGAGGATCAAGGATTTG 623
Query 487 ATGAAGCTGACTTCTTTACTGGGGATGATTCAATTGTTTCAAGAGAGCCTAGTGGGAATG 546
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 624 ATGAAGCTGACTTCTTCACAGGGGATGATTCAATTGTTTCAAGAGAGCCTAGTGGGAATG 683
Query 547 AAGAGCTTTCTGTTCGAGTACAATTAGCTACCAAAATAAAAAAGTTTATAGCTGTCTGCT 606
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 684 AAGAGCTTTCTGTTCGAGTACAATTAGCTACCAAAATTAAAAAGTTTATAGCTGTCTGCT 743
Query 607 ATCCTTGGATACATGCATCAAGTGAAGGATTATCGTTCACTTACCAGCTCTTATATCTGC 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 ATCCTTGGATACATGCATCAAGTGAAGGATTATCGTTCACTTACCAGCTCTTATATCTGC 803
Query 667 TGGACGCTACTGGATTTTATTCTCTTGGGCTACAAGCTCTTGGGATTCAAGTTTGTCGAG 726
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 804 TGGACGCTACTGGATTTTATTCTCTTGGGCTACAAGCTCTTGGGATTCAAGTTTGTAGAG 863
Query 727 CTACAGGGCAAGAACTGATGGATACATCATCAAGAATTTCAAAGATACGGAATCATGAGC 786
|||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 864 CTACAGGGCAAGAACTGATGGATACATCCTCAAGGATTTCAAAGATTCGGAATCATGAGC 923
Query 787 GTGAGAGACTTCGTGGTCCTCCATGGTTAAAAACAGTGCAAGGGGCACTTCTTAGCTGCT 846
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 924 GTGAGAGACTTCGTGGTCCTCCATGGTTAAAAACGGTGCAAGGGGCACTTCTTAGCTGCT 983
Query 847 CATATGCTGTGCTTGACTACGCCCAAACCGGTCTGATTGCAGCAGTTTTTATCTTTAAAA 906
||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 984 CATATGCTGTGCTTGACTATGCCCAAACCGGTCTAATTGCAGCAGTTTTTATCTTCAAAA 1043
Query 907 TGATGGAATGGTGGTATCAATCAGCTGAAGAAAGATTATTAGCTCCAACAGTGTACCCTC 966
|||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||
Sbjct 1044 TGATGGAATGGTGGTATCAATCCGCTGAAGAGAGATTATCAGCTCCAACAGTGTACCCTC 1103
Query 967 CACCTCCACCTCCTCCAGCCCCAAAGATGGCGATAGAAGGAATCCCTCTACCTCCCA-AC 1025
||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | ||
Sbjct 1104 CACCTCCACCTCCTCCAGCCCCAAAGATGGCCAAAGAAGGAATCCCTCTACCTCC-AGAC 1162
Query 1026 AGATCCCTCTGCGCGTTATGCTTGCAAACACGTGCAAACCCATCAGTTGTCACAGTCTCT 1085
||||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||||
Sbjct 1163 AGATCCCTCTGTGCTTTATGCTTGCAAAAACGTGCAAATCCATCAGTTGTCACTGTCTCT 1222
Query 1086 GGATTTGTTTTCTGCTACTCATGCGTATTTAAGTATGTTTCAAAGTACAAGCGATGTCCG 1145
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1223 GGATTTGTTTTCTGCTATTCTTGCGTATTTAAGTATGTTTCAAAGTACAAGCGATGTCCG 1282
Query 1146 GTGACATTGATTCCGGCCAGTGT-GAATCAGATTAGGAGGTTGTTTCATGACACTTAATA 1204
|||||||||||||| ||||| || || ||||||||||||||||||||| |||||||| |
Sbjct 1283 GTGACATTGATTCCAGCCAGCGTTGA-TCAGATTAGGAGGTTGTTTCAGGACACTTAGGA 1341
Query 1205 CCAATCTATTTAATTGTT 1222
||| |||||||||| |||
Sbjct 1342 CCAGTCTATTTAATGGTT 1359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60039851820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5