BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927990
Length=1964
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04470.1 | Symbols: | Ankyrin repeat family protein | chr3:... 3319 0.0
> AT3G04470.1 | Symbols: | Ankyrin repeat family protein | chr3:1189640-1192638
REVERSE LENGTH=2909
Length=2909
Score = 3319 bits (1797), Expect = 0.0
Identities = 1902/1953 (97%), Gaps = 5/1953 (0%)
Strand=Plus/Plus
Query 1 AGTGAGTGTTGTGGA-AAATAATGGAAGATTACTCCAAGTATACTCACAGTCCTGCTCAT 59
||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 765 AGTGAGTGTTGTGGATAAACAATGGAAGATTACTCCAAGTATACTCATAGTCCTGCTCAT 824
Query 60 TTAGCGGTTGTGCTACGTGATCATGCGGCTCTTAGGCGAATTGTTTCGGATCTTCCTCGG 119
||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 825 TTAGCTGTTGTGCTTCGGGATCATGCTGCTCTTAGGCGAATTGTTTCGGATCTTCCTCGG 884
Query 120 TTAGCTAAGGCTGGTGAAGTTACTACAGAGGCTGAGTCTATGGAGTCTGAAG-CTCATGC 178
|||||||||||||||||||||||||| |||||||||||||||||||||| || ||| |||
Sbjct 885 TTAGCTAAGGCTGGTGAAGTTACTACTGAGGCTGAGTCTATGGAGTCTG-AGTCTCGTGC 943
Query 179 TGATTCTGTTTCAGCTGTCATTGATCGCCGTGATGTTCCTGGTCGTGAAACTCCATTGCA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TGATTCTGTTTCAGCTGTCATTGATCGCCGTGATGTTCCTGGTCGTGAAACTCCATTGCA 1003
Query 239 TCTCTCTGTTCGTCTTAGAGATCCTGTCTCTGCTGAGATTTTGATGTCTGCTGGTGCGGA 298
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1004 TCTCGCTGTTCGTCTTAGAGATCCTGTCTCTGCTGAGATTTTGATGTCTGCTGGTGCCGA 1063
Query 299 TTGGAGTCTACAGAACGAGAATGGTTGGAGTGCGTTACAAGAAGCGGTTTGCACTAGAGA 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1064 TTGGAGTCTACAGAACGAGAATGGTTGGAGTGCGTTACAAGAAGCGGTTTGCACAAGAGA 1123
Query 359 AGAGGCCATCGCCATGATCATTGCTCGGCATTACCAGCCTCTTGCTTGGGCTAAATGGTG 418
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 AGAGGCCATCGCCATGATAATTGCTCGGCATTACCAGCCTCTTGCTTGGGCTAAATGGTG 1183
Query 419 CAGGAGACTTCCTCGGATCATTGCATCAGCATCTCGAATCCGTGATTTTTACATGGAGAT 478
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1184 TAGGAGACTTCCTCGGATCATTGCGTCAGCATCTCGGATCCGTGATTTTTACATGGAGAT 1243
Query 479 CACTTTTCATTTTGAGAGCTCCGTAATTCCGTTTATTGGCCGCATTGCTCCTTCCGATAC 538
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1244 CACTTTTCATTTTGAGAGCTCGGTCATTCCGTTTATTGGCCGCATTGCTCCTTCCGATAC 1303
Query 539 TTACAGGATATGGAAACGTGGTTCGAATCTCCGTGCTGATATGACTCTTGCCGGTTTTGA 598
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1304 TTACAGGATATGGAAACGTGGTTCAAATCTCCGTGCTGATATGACTCTTGCTGGTTTTGA 1363
Query 599 TGGGTTTAAAATCCAGCGGTCAGATCAAACATTTCTCTTTCTAGGGGATGGTTACTCGTC 658
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 TGGGTTTAAAATCCAACGGTCAGATCAAACATTTCTCTTTCTAGGGGATGGTTACTCGTC 1423
Query 659 TGAAGACGGTAAAATGTCCCTATCTCCGGGCTCGTTGATTGTTCTTTCGCATAAGGAAAA 718
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 TGAAGATGGTAAAATGTCCCTATCTCCGGGCTCGTTGATTGTTCTTTCGCATAAGGAAAA 1483
Query 719 AGAAATGACAAATGCTTTGGAAGGAGCTGGTGCGCAACCGACAGATGCTGAGGTTGCTCA 778
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1484 AGAAATGACAAATGCTTTGGAAGGAGCTGGTGCGCAACCAACAGATGCTGAGGTTGCTCA 1543
Query 779 TGAAGTGGCTTTGATGTCTCAGACTAATATGTATAGACCTGGAATCGATGTAACTCAAGC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 TGAAGTGGCTTTGATGTCTCAGACTAATATGTATAGACCTGGAATCGATGTAACTCAAGC 1603
Query 839 TGAGCTGGTTTCTCATTTGAATTGGAGACGGCAAGAGAGAACTGAGATGGTTGGGAATTG 898
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1604 TGAGCTGGTTTCTCATTTGAATTGGAGACGGCAAGAGAGAACCGAGATGGTTGGGAATTG 1663
Query 899 GAAAGCAAAAGTTTACGATATGCTTCATGTGATGGTGAGTGTGAAATCTAGACGGG-TCC 957
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1664 GAAAGCAAAAGTTTACGATATGCTTCATGTGATGGTGAGTGTCAAATCTAGACGGGTTCC 1723
Query 958 CTGGTGCAATGACTGATGAAGAGCTCTTTGCGGTTGATGAAGAGCGAACTGCTGCAACAA 1017
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1724 C-GGTGCAATGACTGATGAAGAGCTCTTTGCGGTTGATGAAGAGCGAACTGCTGTAACAA 1782
Query 1018 ACGGTGCAGAGACCAATGGCTTTGAAGACGTATTAACACCTGAGGAAAGACTCCAATTGA 1077
| |||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1783 ATGGTGCAGAGACCGACGGCTTTGAAGACGTACTAACACCTGAGGAAAGACTCCAATTGA 1842
Query 1078 ATTCCGCGCTTCAGACTGGAAATTCCGATGCCATTGAAGATGAAGAGTGTGAAGTTACTG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 ATTCCGCGCTTCAGACTGGAAATTCCGATGCCATTGAAGATGAAGAGTGTGAAGTTACTG 1902
Query 1138 ATCACCAGGAAAACGGAGCTCTCAAGGATAAGAAGGGCTGGTTTGGTTGGAATAAGAAAG 1197
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1903 ATCAACAGGAAAACGGAGCTCTCAAGGATAAGAAGGGCTGGTTTGGTTGGAATAAGAAAG 1962
Query 1198 GCTCAAACACTGAAGATACAAAGCTCAAGAAAGGCTCAAAGTCTGCGCCTGAAGACGGGA 1257
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1963 GCTCAAACACTGAAGATACAAAGCTCAAGAAAGGCTCAAAGTCTGCGCCAGAAGACGGGA 2022
Query 1258 ATCAGAAAGGGAAAAGCCAGAGATCTTCGATGGTATCTGATCATGCAAATGAGGATCTTG 1317
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 2023 ACCAGAAAGGGAAAAGCCAGAAATCTTCGATGGTATCTGATCATGCAAATGAGGATCATG 2082
Query 1318 GAGACGCaaagaaaggaaaggagaagaagaagaagaagaaagGTGTTGCCGGAGATGAGG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2083 GAGACGCAAAGAAAGGAAAGGAGAAGAAGAAGAAGAAGAAAGGTGTTGCCGGAGATGAGG 2142
Query 1378 TTAAGCGTGAGAGTGAATACAAGAAAGGACTAAGACCGGTCTTGTGGTTAACACCGGACT 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2143 TTAAGCGTGAGAGTGAATACAAGAAAGGACTAAGACCGGTCTTGTGGTTAACACCGGACT 2202
Query 1438 TTCCTCTTACGACAGACGAGCTTTTACCGCTCCTCGACATATTAGCTAACAAGGTTAAAG 1497
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2203 TTCCTCTTACGACAGACGAGCTTTTACCGCTCCTTGACATATTAGCTAACAAGGTTAAAG 2262
Query 1498 CCGTTAGGAGACTCAGAGAGCTTCTCACAACTAAACTTCCACTAGGCACATTCCCTGTAA 1557
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2263 CCGTTAGGAGACTCAGAGAGCTTCTCACAACTAAACTTCCGCTAGGCACATTCCCTGTAA 2322
Query 1558 AGCTCGCCATTCCCATTATTCCAACGGTTCGAGTTGTTGTTACTTTCACAAAATTTGAAG 1617
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 2323 AGCTCGCCATTCCCATTATTCCTACGGTTCGAGTTGTTGTTACTTTCACCAAATTTGAAG 2382
Query 1618 AGCTTCAGGCGGCTGAGGAGGAGTTCTCAACGCCTCCTTCTAGTCCGGTATTTCATGATG 1677
| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2383 AACTTCAGGCAGCTGAGGAGGAGTTCTCAACACCTCCTTCTAGTCCGGTATTTCATGATG 2442
Query 1678 CAAAGTCTTCTTCTTCAGAGAACTCATCACCATCATGGATCTCATGGATGAGAAGTGGCA 1737
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 CAAAGTCGTCTTCTTCAGAGAACTCATCACCATCATGGATCTCATGGATGAGAAGTGGCA 2502
Query 1738 AATCAAGTGACAATGATAGTAACCGTTACAAAGACGAGGTTGACCCTTTCTTGATACCTT 1797
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2503 AATCAAGTGACAATGATAGTAACCGTTACAAAGACGAGGCTGACCCTTTCTTGATACCTT 2562
Query 1798 CAGATTACAAATGGATCGATTCAGCTGAGAAGAAACGTCGAATGAAAGCTAAGAAAGCTA 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2563 CAGATTACAAATGGATCGATTCAGCTGAGAAGAAACGTCGAATGAAAGCTAAGAAAGCTA 2622
Query 1858 AGAGCAAGAGGAAGAAACAGGCGGCTACAAAAGCCGCTGGTGCTAGTGACTCGGGTACCC 1917
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2623 AGAGCAGGAGGAAGAAACAAGCGGCTACAAAAGCCGCTGGTGCTAGTGACTCGGGTACCC 2682
Query 1918 GTTCAAATCAAGTAGCCGAAGAATGATGAGTCC 1950
|||||||||| ||||||||||||||||||||||
Sbjct 2683 GTTCAAATCATGTAGCCGAAGAATGATGAGTCC 2715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97288656210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5