BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927993

Length=650
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G65450.1 | Symbols: UBP17 | ubiquitin-specific protease 17 |...   274    8e-73


> AT5G65450.1 | Symbols: UBP17 | ubiquitin-specific protease 17 
| chr5:26157863-26161096 FORWARD LENGTH=2196
Length=2196

 Score =  274 bits (148),  Expect = 8e-73
 Identities = 175/187 (94%), Gaps = 5/187 (3%)
 Strand=Plus/Plus

Query  341   TTGAAGAAATGAGCTTCTCGTGTGAGTTATTGTTTGTGAAACTTTATTGTGATAGAGTAG  400
             |||| || ||||||||||||| ||||   |||||||||||||||||||||||||||||||
Sbjct  917   TTGATGAGATGAGCTTCTCGTATGAG---TTGTTTGTGAAACTTTATTGTGATAGAGTAG  973

Query  401   AATTACAGCCAGTTGGCCTTGTGAACTTAGGGAACAGTTGTTATGCAAATGCTGTCCTTC  460
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  974   AATTACAGCCATTTGGCCTTGTGAACTTAGGGAACAGTTGTTATGCAAATGCTGTCCTTC  1033

Query  461   AGTTCTTGGCATTCACT-GGCCACTTATATCATACCCTATTAGGGGATTACACTCTAATA  519
             ||| ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||| |
Sbjct  1034  AGTGCTTGGCATTCACTCGGCCACTGATATCATACCTTATTAGGGGATTACACTCTAA-A  1092

Query  520   ACATGTA  526
             |||||||
Sbjct  1093  ACATGTA  1099



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31396341875


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5