BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg927993 Length=650 Score E Sequences producing significant alignments: (Bits) Value AT5G65450.1 | Symbols: UBP17 | ubiquitin-specific protease 17 |... 274 8e-73 > AT5G65450.1 | Symbols: UBP17 | ubiquitin-specific protease 17 | chr5:26157863-26161096 FORWARD LENGTH=2196 Length=2196 Score = 274 bits (148), Expect = 8e-73 Identities = 175/187 (94%), Gaps = 5/187 (3%) Strand=Plus/Plus Query 341 TTGAAGAAATGAGCTTCTCGTGTGAGTTATTGTTTGTGAAACTTTATTGTGATAGAGTAG 400 |||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 917 TTGATGAGATGAGCTTCTCGTATGAG---TTGTTTGTGAAACTTTATTGTGATAGAGTAG 973 Query 401 AATTACAGCCAGTTGGCCTTGTGAACTTAGGGAACAGTTGTTATGCAAATGCTGTCCTTC 460 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 974 AATTACAGCCATTTGGCCTTGTGAACTTAGGGAACAGTTGTTATGCAAATGCTGTCCTTC 1033 Query 461 AGTTCTTGGCATTCACT-GGCCACTTATATCATACCCTATTAGGGGATTACACTCTAATA 519 ||| ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||| | Sbjct 1034 AGTGCTTGGCATTCACTCGGCCACTGATATCATACCTTATTAGGGGATTACACTCTAA-A 1092 Query 520 ACATGTA 526 ||||||| Sbjct 1093 ACATGTA 1099 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31396341875 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5