BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927994
Length=635
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04220.1 | Symbols: AtRLP46, RLP46 | receptor like protein 4... 366 1e-100
> AT4G04220.1 | Symbols: AtRLP46, RLP46 | receptor like protein
46 | chr4:2033427-2035946 FORWARD LENGTH=2436
Length=2436
Score = 366 bits (198), Expect = 1e-100
Identities = 321/378 (85%), Gaps = 18/378 (5%)
Strand=Plus/Plus
Query 236 AGATATTCCTGGAGATGGGTTTGTGAGCTTGACCAGTTTTATCTCTCTTGACATGAG-TG 294
||| ||||||||| ||| |||||||| ||||||||| || || |||||||||||| | ||
Sbjct 357 AGAGATTCCTGGATATGCGTTTGTGAACTTGACCAGCTTGATTTCTCTTGACATGTGTTG 416
Query 295 ATAAGAGCTTTAACGGCTCTA-TCACTCCTGAATTGTTCTCCTTGA-AGACTCTTCGGCG 352
||| || ||||||||||| | || ||| ||||||||||||||||| | | ||||| |||
Sbjct 417 -TAATAGATTTAACGGCTCAATTC-CTCATGAATTGTTCTCCTTGACA-AATCTTCAGCG 473
Query 353 -CTTGGACTTAAGCAGGAATGTTATTGGTGGTACGTTGAGTGGTGACATCAAAGAGCTCA 411
||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 474 TCTT-GATTTAAGCAGGAATGTTATTGGCGGTACGTTGAGTGGTGACATCAAAGAGCTCA 532
Query 412 AGAATCTGCAGGAACTGATCTT-GTATGAGAATTTCATTG-AGGGAGAGATTCCTCCAGA 469
|||||||||||||||||||||| | |||||||| |||||| ||| || ||||||| ||||
Sbjct 533 AGAATCTGCAGGAACTGATCTTAG-ATGAGAATCTCATTGGAGG-AGCGATTCCTTCAGA 590
Query 470 AATAGGTAGTCTTGCCAAACTGCGGACGCTGACATT-ATGGCCGAACATGTTCAGTGGTT 528
|||||||||||||| | |||| | ||||||||| || | ||| ||||||||||| | |||
Sbjct 591 AATAGGTAGTCTTGTCGAACTACTGACGCTGACCTTGA-GGCAGAACATGTTCAATAGTT 649
Query 529 CTAAACCATTGTCTGTATCACAGTTGA-GTAAGCTCGAAACGTTTGATCTCCAGAACAAT 587
| | ||| | ||||||||||| ||| | | |||||| ||||| | ||||| |||||||||
Sbjct 650 CCATACCGTCGTCTGTATCACGGTTAACG-AAGCTCAAAACGATAGATCTTCAGAACAAT 708
Query 588 T-CATTGTCTTTTGAGAT 604
| | ||||||| | ||||
Sbjct 709 TTC-TTGTCTTCTAAGAT 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30642829670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5