BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928001
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04520.1 | Symbols: THA2 | threonine aldolase 2 | chr3:12172... 1742 0.0
> AT3G04520.1 | Symbols: THA2 | threonine aldolase 2 | chr3:1217239-1219759
REVERSE LENGTH=1316
Length=1316
Score = 1742 bits (943), Expect = 0.0
Identities = 1049/1100 (95%), Gaps = 8/1100 (1%)
Strand=Plus/Plus
Query 5 AGTTAGCCAAATCAAGATGGTGACGCCAACTACAATTAGAACCGTGGATCTCCGCTCCGA 64
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 75 AGTGAGCCAAATCAAGATGGTGACGCCAACTACAATTAGAACCGTCGATCTCCGCTCCGA 134
Query 65 CACGGTGACTAAACCAACGGAGTCAATGCGTTCAGCGATGGCAAACGCGGAAGTAGACGA 124
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 135 CACGGTGACTAAACCAACAGAGTCAATGCGTTCAGCAATGGCAAACGCGGAAGTAGACGA 194
Query 125 CGACGTTTTGGGAAACGATCCAACGGCTCTGCGTTTGGAGAAAGAGGTGGCTGAGATCGC 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 CGACGTTTTGGGAAACGATCCAACGGCTCTGCGTTTGGAGAAAGAGGTGGCTGAGATCGC 254
Query 185 CGGAAAAGAGGCGGCTATGTTTGTTCCGTC-GGGAACAATGGGGAATCTGATAAGCGTGT 243
|||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 255 TGGAAAAGAGGCGGCGATGTTTGTTCCGTCAGGGA-CAATGGGGAATCTGATAAGCGTGT 313
Query 244 TGGTTCATTGTGATGAGAGAGGGAGTGAAGTGATTCTTGGAGATGACTCTCACATTCATA 303
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 314 TGGTCCATTGTGATGAGAGAGGGAGTGAAGTGATTCTTGGAGACGACTCTCACATTCATA 373
Query 304 TATATGAAAACGGCGGCATTTCAAGCCTCGGTGGTGTGCATCCGAGGACGGTGAAGAACG 363
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 374 TATATGAAAACGGCGGCGTTTCAAGCCTCGGTGGTGTGCATCCGAGGACGGTGAAGAATG 433
Query 364 AGGAAGACGGTACGATGGAGATTGGTGCTATTGAAGCTGCCGTGAGGAGTCCCAAAGGAG 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 AGGAAGACGGTACGATGGAGATTGGTGCTATTGAAGCTGCCGTGAGGAGTCCCAAAGGAG 493
Query 424 ATCTTCATCATCCGGTTACTAAGCTTATATGTCTTGAGACCACTCAAGCAAATTGTGGAG 483
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 494 ATCTCCATCATCCGGTTACTAAGCTTATATGTCTTGAGAATACTCAAGCAAATTGTGGAG 553
Query 484 GTAGATGCCTGCCTGTAGATTATATAGACATAGTCGGAGAATTAGCCAAGAAACATGGTT 543
|||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 554 GTAGATGCCTTCCTATAGAATATATAGACAAAGTCGGAGAATTAGCCAAGAAACATGGTT 613
Query 544 TGAAGCTTCACATTGACGGAGCTCGGATCTTCAACGCTTCTGTGGCACTTGGAGT-CCCG 602
||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||
Sbjct 614 TGAAGCTTCACATTGACGGAGCTAGGATTTTCAACGCTTCTGTGGCACTTGGAGTTCCCG 673
Query 603 GTGAAGAGGATTGTTCAAGCAGCTGATTCGGTCTCGATTTGTTTGTCGAAAGGAATAGGT 662
|||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||
Sbjct 674 -TGAAGAGGATTGTTCAAGCAGCTGATTCTGTCTCGATCTGTTTGTCGAAAGGTATTGGT 732
Query 663 GCACCGGTCGGTTCGGTAATCGTGGGAAGCAAGGAGTTCATCACTAAAGCAAGGTGGTTA 722
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 733 GCACCGGTCGGTTCGGTAATCGTGGGAAGCAAGAAGTTCATTACTAAAGCAAGGTGGTTA 792
Query 723 AGGAAAACTTTAGGCGGAGGAATGAGACAGATAGGTGTGCTCTGTGCCGCCGCGTTGGTG 782
|||||||| ||||||||||||||||||||||| || |||||||| |||||||| ||||||
Sbjct 793 AGGAAAACATTAGGCGGAGGAATGAGACAGATCGGCGTGCTCTGCGCCGCCGCATTGGTG 852
Query 783 GCTCTCCATGAAAATGTCGCCAAGCTCGAAGATGACCACAAGAAAGCTAGGAACTTGGCA 842
|||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||||||
Sbjct 853 GCTCTCCATGAAAACGTCGCCAAGCTCGAAGATGACCATAAGAAAGCCAGGGTTTTGGCA 912
Query 843 GAAGGACTGAACCGGATTGAACGGTTAAGAGTGAACGTGGCAGCTGTGGAAACCAACATC 902
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 913 GAAGGACTGAACCGGATTGAACGGTTAAGAGTGAACGTTGCAGCTGTGGAAACCAACATC 972
Query 903 ATATACGTAGACATACCAGAAGATCCAAAATTTGGAGCAGAAGAGGCATGTAAGAGTTTG 962
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 973 ATATACGTAGACATACCAGAAGATCCAAAATTTGGAGCAGAAGAGGCATGTAAGAGCTTG 1032
Query 963 GAAGATGTCGGTGTGCTTGTCATACCCCAAGCTACATTCAGAATCAGGATTGTTCTACAT 1022
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 GAAGATGTCGGTGTGCTTGTCATACCCCAAGCTACATTCAGAATCAGGATTGTTCTACAC 1092
Query 1023 CACCAAATCTCAGACGTCGACGTGGAATATGTACTCTCTTGCTTTGAGAAAACGTTTTAG 1082
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1093 CACCAAATCTCAGACGTCGACGTGGAATATGTACTCTCTTGCTTTGAGAAAATATTTCA- 1151
Query 1083 CTCAGTGAGGCTAGAAGAGA 1102
||| |||| | ||||||||
Sbjct 1152 CTC-GTGAAG--AGAAGAGA 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54015786420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5