BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg928004 Length=316 Score E Sequences producing significant alignments: (Bits) Value AT3G04545.1 | Symbols: | Cysteine-rich protein | chr3:1224966-... 248 2e-65 > AT3G04545.1 | Symbols: | Cysteine-rich protein | chr3:1224966-1225325 FORWARD LENGTH=246 Length=246 Score = 248 bits (134), Expect = 2e-65 Identities = 193/221 (87%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 4 TTT-TACTCTTAATAATAATGGTTGCTTCGTTGTCCAATTGCAACATCTTGGCTTCAGAG 62 ||| |||||||||||||| ||| ||||||||||||||||| |||| ||||||| ||||| Sbjct 28 TTTGTACTCTTAATAATATTGGCTGCTTCGTTGTCCAATTTCAACGTCTTGGCATCAGAT 87 Query 63 ATCAAACCTACCGGAAGAATTGGTAAT-ATGTGCAAGCAGATATGTTCGGAAACGTATGG 121 |||||||||||||| ||||||| |||| | ||||||| ||| ||||||| ||||||||| Sbjct 88 ATCAAACCTACCGGGAGAATTGATAATCA-ATGCAAGCGGATGTGTTCGGCAACGTATGG 146 Query 122 GAATGGT-TATGTGCCGCGGACTGTAGGAAG-GCTGGCTTCTCATCCGGACAATGTTTTA 179 ||| ||| ||||||||| ||||||| |||| | ||| |||||||||||||||||||||| Sbjct 147 GAACGGTAAATGTGCCGCAGACTGTA-GAAGTGATGGTTTCTCATCCGGACAATGTTTTA 205 Query 180 CTTCTCCTCCTTTGGAAAATAAATGTTGTTGCAACAAGTGA 220 ||||||| ||||| || |||| ||||||||||||||| ||| Sbjct 206 CTTCTCCACCTTTCGACAATAGATGTTGTTGCAACAATTGA 246 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14678182708 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5