BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928004
Length=316
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04545.1 | Symbols: | Cysteine-rich protein | chr3:1224966-... 248 2e-65
> AT3G04545.1 | Symbols: | Cysteine-rich protein | chr3:1224966-1225325
FORWARD LENGTH=246
Length=246
Score = 248 bits (134), Expect = 2e-65
Identities = 193/221 (87%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 4 TTT-TACTCTTAATAATAATGGTTGCTTCGTTGTCCAATTGCAACATCTTGGCTTCAGAG 62
||| |||||||||||||| ||| ||||||||||||||||| |||| ||||||| |||||
Sbjct 28 TTTGTACTCTTAATAATATTGGCTGCTTCGTTGTCCAATTTCAACGTCTTGGCATCAGAT 87
Query 63 ATCAAACCTACCGGAAGAATTGGTAAT-ATGTGCAAGCAGATATGTTCGGAAACGTATGG 121
|||||||||||||| ||||||| |||| | ||||||| ||| ||||||| |||||||||
Sbjct 88 ATCAAACCTACCGGGAGAATTGATAATCA-ATGCAAGCGGATGTGTTCGGCAACGTATGG 146
Query 122 GAATGGT-TATGTGCCGCGGACTGTAGGAAG-GCTGGCTTCTCATCCGGACAATGTTTTA 179
||| ||| ||||||||| ||||||| |||| | ||| ||||||||||||||||||||||
Sbjct 147 GAACGGTAAATGTGCCGCAGACTGTA-GAAGTGATGGTTTCTCATCCGGACAATGTTTTA 205
Query 180 CTTCTCCTCCTTTGGAAAATAAATGTTGTTGCAACAAGTGA 220
||||||| ||||| || |||| ||||||||||||||| |||
Sbjct 206 CTTCTCCACCTTTCGACAATAGATGTTGTTGCAACAATTGA 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14678182708
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5