BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928005
Length=1378
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04550.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 2124 0.0
> AT3G04550.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast stroma, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to
110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa
- 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr3:1225922-1227436 FORWARD
LENGTH=1515
Length=1515
Score = 2124 bits (1150), Expect = 0.0
Identities = 1306/1380 (95%), Gaps = 15/1380 (1%)
Strand=Plus/Plus
Query 14 ATTCACCATGTTTTCTCTCAAATCCTCAATCTCCTCACCTTTCACACAATCCACCACTCA 73
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 33 ATTCACCATGTTCTCTCTCAAATCCTTAATCTCCTCACCTTTCACACAATCCACCACTCA 92
Query 74 TGGATTATTCACCAACCCGATTACCCGACCCGTTAATCCATTA-C-C---CCG------T 122
||||||||||||||||||||||||||||||||||||||||||| | | ||| |
Sbjct 93 TGGATTATTCACCAACCCGATTACCCGACCCGTTAATCCATTACCACGTACCGTTTCCTT 152
Query 123 -ACCGTTACTGCTTCCATGATACCCAAAAAATCCTCAGCTAACATGATTCCCAGAAACCC 181
|||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 153 CACCGTTACCGCTTCCATGATACCCAAAAGATCCTCAGCTAACATGATTCCCAAAAACCC 212
Query 182 TCCGGCGCGGCAACAGCTCTACCAGCCTTTCCGGCCACCGTCATCTCCGATTCCAACCCA 241
||||||| |||||||||||||||| || ||||| |||||||||||||| |||||||||||
Sbjct 213 TCCGGCGAGGCAACAGCTCTACCAACCGTTCCGACCACCGTCATCTCCCATTCCAACCCA 272
Query 242 ATTCCGTTCACTCGACTCCGCCGGTAAAATCGAAATCCTCGCCGGTCGAATGGCTCTCTG 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 ATTCCGTTCACTCGACTCCGCCGGTAAAATCGAAATCCTCGCCGGTCGAATGGCTCTCTG 332
Query 302 GTTCGAATACGCTCCTCTTATCTCTTCTCTCTACACCGATGGTTTCACTCCTCCCACCAT 361
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 333 GTTCGAATACGCACCTCTTATCTCTTCTCTTTACACCGATGGTTTCACTCCTCCAACCAT 392
Query 362 CGAAGAGCTCACCGGAATCTCAAGCATTGAACAGAACCGTTTAATCGTCGGTGCGCAAGT 421
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 393 CGAAGAACTCACCGGAATCTCAAGCATCGAACAGAACCGTTTAATCGTCGGTGCGCAAGT 452
Query 422 TCGAGACTCAATTCTTCAATCTATACATGAACCGGAGCTCATTGCGGCGTTCGACACCGG 481
||| |||||||||||||||||||| |||||||||||||||||| | ||||||||||||||
Sbjct 453 TCGTGACTCAATTCTTCAATCTATCCATGAACCGGAGCTCATTTCTGCGTTCGACACCGG 512
Query 482 TGGTGCAGAGCTTCTATACGAAATCCGTCTCCTCAGCACCACGCAGCGCGTTGCAGCCGC 541
|||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 513 TGGTGCAGAGCTTCTATACGAAATTCGTCTCCTTAGCACCACGCAGCGTGTTGCAGCCGC 572
Query 542 CACATTCATCATTGATCGTAATATTGATTCGAAAGGCGCACAGGATTTGGCGCGAGCCAT 601
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 573 CACATTCATCATTGATCGTAATATTGATTCGAAAGGAGCACAGGATTTGGCACGAGCCAT 632
Query 602 CAAGGATTATCCTAACCGGCGTGGAGACGTTGGATGGTTGGATTTTGATTACAATTTACC 661
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 633 CAAGGATTATCCTAACCGTCGTGGAGACGTTGGATGGTTGGATTTTGATTACAACTTACC 692
Query 662 AGGAGATTGTCTTTCGTTCTTGTATTACAGGCAGAGCAGAGAGAACAAGAATCCATCGGA 721
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 693 AGGAGATTGTCTTTCATTCTTGTATTACAGGCAGAGCAGAGAGAATAAGAATCCATCGGA 752
Query 722 ACAGAGAACCTCGATGCTTCTACAAGCATTGGGGGTTGCAGAATCAGAAAAGGCCAAGAA 781
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 753 TCAGAGAACCTCGATGCTTCTACAAGCATTGGGGGTTGCAGAATCAGAAAAGGCTAAGAA 812
Query 782 CAAGTTGAACAAAGAGCTATACGGggagaaggaagaagagaaggagaaggagaagaagaa 841
|| |||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 813 CAGGTTGAACACAGAGCTATACGGGGACAAGGAAGCAGAGAAGGAGAAGGAGAAGAAGAA 872
Query 842 gaaggaagaggaagTCAAAGCTATTCGGATTCCGGTGGTGAGGCTAAAGTTCGGAGAAGT 901
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 873 GAAGGAAGAGGAAGTCAAAGCTATTCGGATTCCAGTGGTGAGGCTTAAGTTTGGAGAAGT 932
Query 902 AGCAGGGGCGAGCTCGGTGGTTGTTTTGCCGGTTTGTAAAGCAGAGGAAGGGGAAAAGAA 961
||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 933 AGCAGAAGCGACCTCGGTGGTAGTTTTACCGGTTTGTAAAGCAGAGGAAGGGGAAAAGAA 992
Query 962 GATTCTTGAAGCTCCAATGGAGATCATAGCCGGAGGGGATTTCAAGGTTGTTGAGGCGGA 1021
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 993 GATTCTTGAAGCTCCAATGGAGATCATAGCCGGAGGGGATTTTAAGGTGGTTGAGGCGGA 1052
Query 1022 GAAAGGATGGAAGAGATGGGTAGTTCTTCCGGGGTGGAACCCAGTGGCGGCCATTGGGAA 1081
|||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||
Sbjct 1053 GAAAGGATGGAAGAGATGGGTAGTGCTTCCGTCGTGGAACCCAGTGGCAGCCATTGGGAA 1112
Query 1082 AGGCGGTGTGGCGGTTTCTTTCAGGGATGATAGAAAAGTACTGCCTTGGGACGGAAAGGA 1141
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1113 AGGCGGTGTGGCGGTTTCTTTCAGGGATGATAGAAAAGTGCTGCCTTGGGATGGAAAGGA 1172
Query 1142 GGAGCCTTTACTGGTAGTGACCGATAGGGTGAGGAATGTCGTGGAGGCCGATGACGGGTA 1201
||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||
Sbjct 1173 GGAGCCTTTACTGGTAGTGGCCGATAGGGTGAGGAATGTTGTGGAGGCTGATGACGGGTA 1232
Query 1202 TTACCTCGTTGTGGCTGAGAACGGACTTAAGCTAGAGAAAGGATCAGAGTTGAAGGCGAG 1261
||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1233 TTATCTCGTGGTGGCTGAGAACGGACTTAAGCTAGAGAAAGGATCAGATTTGAAGGCGAG 1292
Query 1262 AGAGGTGAAGGAGAGTTTAGGGATGGTTGTTTTGGTGGTGAGGCCGCCAAGAGAAGATGA 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 AGAGGTGAAGGAGAGTTTAGGGATGGTTGTTTTGGTGGTGAGGCCGCCAAGAGAAGATGA 1352
Query 1322 TGAAGATTGGCAGACAAGTCATCAAAACTGGGACTGA-T-A-TAGAATCAATACCCATAT 1378
||| |||||||||||||||||||| |||||||||||| | | |||||||||||| |||||
Sbjct 1353 TGATGATTGGCAGACAAGTCATCAGAACTGGGACTGAATTAATAGAATCAATACTCATAT 1412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67871136840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5