BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928006
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04560.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1986 0.0
> AT3G04560.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 16
growth stages; Has 227 Blast hits to 225 proteins in 83 species:
Archae - 0; Bacteria - 17; Metazoa - 98; Fungi - 29; Plants
- 51; Viruses - 1; Other Eukaryotes - 31 (source: NCBI
BLink). | chr3:1227360-1229408 REVERSE LENGTH=1470
Length=1470
Score = 1986 bits (1075), Expect = 0.0
Identities = 1229/1302 (94%), Gaps = 15/1302 (1%)
Strand=Plus/Plus
Query 1 TCGACGAACCGGAGAGAGAGATGGCGGACAATCTATTCTCAGGGCTGCCACCTCCTTCTT 60
|||||||| | | ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 53 TCGACGAA-CTG-GAGAGAGATGGCGGAAAATCTATTCTCAGGGCTGCCACCTCCTTCTT 110
Query 61 CATCTCAGCAGCAAGAGCTACCAATTTCTCTAAAACCAGACGATTCAAAGATTGAAACTT 120
|||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 111 CATCTCAGCAGCAAGAGCTACCAATTTCTCCAATACCAGACGAGTCAAAGATTGAAACTT 170
Query 121 CCTCTCCAGCTCCGACTCTGGTTCTCAAGAGTGCCCTAAAGCGATCGAAGCCAGAAGAAT 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 CCTCTCCAGCTCCGATTCTGGTTCTCAAGAGTGCCCTAAAGCGATCGAAGCCAGAAGAAT 230
Query 181 CTGCACCCAATGTTTCAGCTCCTCCTGTTCTCAAGAGCGCACTTAAGCGGTCAAAACCAT 240
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 231 CTGCACCCAATCTTTCAGCTCCTCCTGTTCTCAAGAGCGCACTAAAGCGGTCAAAACCAT 290
Query 241 CAGAATCTACACCGGAACCAG-A--AGGTA-CATACAATTCC---GAA-CGTTTACAGTT 292
|||||||||| |||||||||| | | | | | | | ||| || ||| |||||||
Sbjct 291 CAGAATCTACTCCGGAACCAGTACCA-GAACCGGA-AGCTCCTAAAAAGCGTCTACAGTT 348
Query 293 TAAGACATCAACCGATGCATCAGAAGAACAAGTGATTGAAGCGATGCAGAAGATAACATC 352
|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 349 TAAGACATCAACCGATGCATCAGAGGAACAAGTGATAGAAGCTATGCAGAAGATAACATC 408
Query 353 TCACATCAAGAACCCTTCTAAGTTCTCCAAAGCCTCAAAGCTTGCTATACGGCTGATCCA 412
||| |||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 409 TCATATCAAGAACCCTTCCAAATTCTCCAAAGCCTCGAAGCTTGCTATACGGCTGATCCA 468
Query 413 AGCTGGTAGTGTGAAGCCAGAAACAAGCAGCTACTTCATTGCGATGCTTGAGGCTGCCAT 472
||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||
Sbjct 469 AGCTGGTAGTGTGAAGCCAGAAACAAGCAGCTATTTTATTGCGATACTTGAAGCTGCCAT 528
Query 473 GTCGTCAAAAACTCCTTGTACTGATCGCTTGGTTCGAGCAGACTATCATGCATTGTTCTC 532
|||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 529 GTCGTCTAAAACTCCTTGTACAGATCGCTCGGTTCGAGCAGACTATCATGCATTGTTCTC 588
Query 533 GGCAGCTCAGGATGTCGCCGAGTGTCTAGATAAAAGCCAGAAGAATCTGTTGACCATATG 592
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 589 GGCAGCTCAGGATGTAGCCGAGTGCCTTGATAAAAGCCAGAAGAATCTGTTGACCATATG 648
Query 593 GACATTCAAAGCAGTTGTGGCTAATGACCTCTTCACTGATGACAGCTTTGTGTTTTCCAA 652
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 649 GACATTCAAAGCAGTTGTGGCTAATGACCTCTTCACTGATGACAGCTTTATGTTTTCCAA 708
Query 653 GACTGCTACTCAAATAAAGGAGGCTATATCTGATCTTCCGGTTTCAACTGAGGAGGATGA 712
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 709 GACTGCTACTCGTATAAAGGAGGCTATATCTGATCTTCCGGTTTCAACCGAGGAGGATGA 768
Query 713 TGTGGAAGAAGCAGCTGCTCTTGAAGAAGCGGCGGTGAAGGAAAATGGAGATGGCCAGAC 772
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 769 TGTGGAAGAAGCAGCTGCTCTTGAAGAAGCAGCGGTGAAAGACAATGGAGATGGCCAGAC 828
Query 773 AACGCAGGACGTAGCTGAAGCTGCTTCAGCTGGAAATAATGAGGATGTCGAGTCTGATCC 832
|||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 829 AACGCAGGACGTGGCTGAAGCTGCTTCAGCTGGAGATAATGAGGCTGTCGAGTCTGATCC 888
Query 833 CTTTGGGCTCGATGCCTGGATTCCCAGTTCTGGAAAGAAAAATGGTAAAACAAAGATAAA 892
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ATTTGGACTAGATGCCTGGATTCCCAGTTCTGGAAAGAAAAATGGTAAAACAAAGATAAA 948
Query 893 GAGAACAAATGAAGATACAGATGCTGAAGAGAATAAGAGGTTTCTCAGGTCAAAAAGAGA 952
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 949 GAGAACAAATGAAGATCCAGATGCCGAAGAGAATAAGAGGTTTCTCAGGTCAAAAAGAGA 1008
Query 953 AGCTTTGATTACATGCTTAGAGATTGCTGCACGCCGTTACAAAGTTCCATGGTGCCAAAC 1012
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 AGCTTTGATTACATGCTTGGAGATTGCTGCACGCCGTTACAAAGTTCCATGGTGCCAAAC 1068
Query 1013 TGTTATAGACATATTGGTGAAACATGCCTTTGACAACGTGTCAAGGTTCACATCACAGCA 1072
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1069 AGTTATAGACATATTGGTGAAACATGCCTTTGAGAACGTGTCAAGGTTCACATCACAGCA 1128
Query 1073 GAGACAAGCAGTGGAGAAACTCTGGGCTTCTGTTCGAGAACAACATCTCCGTAGGAAGCA 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 GAGACAAGCAGTGGAGAAACTCTGGGCTTCTGTTCGAGAACAACATCTCCGTAGGAAGCA 1188
Query 1133 AGGTAAATCAGTCACTGGAAAACTCGACGTGACAGCTTTTGAATCGCTTCAGGATAAATA 1192
||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1189 AGGCAAATCAGTCACAGGAAAACTAGACGTTACAGCTTTTGAATCGCTTCAGGATAAATA 1248
Query 1193 CGCCAACGAGAAAATGAGCATCCGGAGCTCAGTTGGAGCCAGCGGTGAACGCCGTGCCCA 1252
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1249 CGCCAACGAGAAAATGAGCATCCGAAGCTCAGTTGGAGCCAGCGGTGAACGCCGTGCACA 1308
Query 1253 GCAATGGCTCGGTTAATAAAACA-TTTACCaaaaaaaGTCTG 1293
||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 1309 GCAATGGCTCGGTTAATAAAACAGTTT-CCAAAAAG-GTCTG 1348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63604090515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5