BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928019
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT2G13630.1 | Symbols: | F-box associated ubiquitination effec... 195 1e-48
AT3G10790.1 | Symbols: | F-box associated ubiquitination effec... 139 6e-32
AT4G29970.1 | Symbols: | F-box and associated interaction doma... 124 2e-27
> AT2G13630.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:5684538-5685431 REVERSE LENGTH=894
Length=894
Score = 195 bits (105), Expect = 1e-48
Identities = 448/605 (74%), Gaps = 58/605 (10%)
Strand=Plus/Plus
Query 628 GAGGAGCATCAAGTTTTCACTCTAGGAGCTAAACAAAAATGGAGAAGGATCGAATGTAAC 687
||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||
Sbjct 316 GAGGAGCATCAAGTTTTCACTCTAGGAGCAAAACAAAAATGGAGAATGCTCGAATGTAAG 375
Query 688 CATGA-TCATCTTCCTCCTTCTTTAACTAAAGGGGTATGCATA-AACGGTGTTGTTTATT 745
|| | ||||| || | | || | || ||||| ||||| | || || ||||| ||||
Sbjct 376 TAT-ACTCATCGTCATTATCCTAGATCTCAAGGGATATGC-TGGAATGGGGTTGTGTATT 433
Query 746 ATT-ATGCTTGGATCAAA-AGTGAAGGATCTTTGATAAGCTTTGATCTGATATCTGAAGT 803
||| | |||| |||| | | || ||||||| || ||||| ||||||| ||||||||
Sbjct 434 ATTTA-GCTTCTTTCAACGA-TAAACGATCTTTAATGAGCTTCGATCTGAGATCTGAAGA 491
Query 804 GTTTAATGTCATTAAGTTACCTGAGGAT-AT---C--CAATGCCTA-G-TGAACT----- 850
|||||||| |||||| ||| | || || || | ||| | || | | || |
Sbjct 492 CTTTAATGTTATTAAGCTACTTAAGAATCATAAACTACAA-GAGTATGGTAAATTGGTGG 550
Query 851 AC-A-A-TGGAAAGATAGCTTTAGCGAGTTTTTGTAAATTA-GGTAC-ACTTGACCTGTG 905
|| | | |||||||||| || || | || | | || | | ||| | ||||||||||||
Sbjct 551 ACCACACTGGAAAGATAACTATAATGTGTCAT-GCAAGTAATGGT-CTACTTGACCTGTG 608
Query 906 GGTTCTGGAAGATGCCAGCAAACAAGAATGGTCAAAAGTTTCT-CTCTTGGTTCCTTCT- 963
||||||||||||||||| |||| ||||||||||| || | || | | || ||||||||
Sbjct 609 GGTTCTGGAAGATGCCAACAAAGGAGAATGGTCAACAGCTGCTGC-CGTGATTCCTTCTA 667
Query 964 TGGACAGATTTAGTTGTTGAT-GAGAATCTTTATTTCAAGGTCAGGGGTACACTTAGTAC 1022
| || ||||||||||| || | ||| | || | | |||| |||| |||| |||
Sbjct 668 TTGA-AGATTTAGTTGGCAATCGTGAA-C---ATGT---GTTCAGTGGTATACTTGGTAT 719
Query 1023 CGGGGAGCTTATATTTACACCGACTCGT-CCAGTTAGAC-CGTTCTATTTTA-TCAGTTT 1079
|| ||| ||||| || |||| ||| | || || || |||| | |||| || |||
Sbjct 720 TGGTGAGATTATACTTGTACCG-CTCCTACCTCCTA-ACACGTTTT-TTTTCCTCTGTTA 776
Query 1080 CGATC-TCAAGGAAAACAGTGCCAAAAAAGTTGTGGTTGAA-GAAATTGGAGATAACTTT 1137
||||| | |||||||| | ||| | |||||||||| ||||| | | ||||||| | ||
Sbjct 777 CGATCCT-AAGGAAAAAAATGCTAGAAAAGTTGTGATTGAAAGTA-TTGGAGA-AGCT-- 831
Query 1138 GCT-A-GTCTCGAAATCTATTTCGATCATGTGGAGAGTCCTATGGTTCTGTCAAATGTAA 1195
||| | ||| | ||| ||||||| |||| ||||||| |||||||||| |||| ||||
Sbjct 832 GCTCATGTCAGGG--TCTTTTTCGATTATGTAGAGAGTCATATGGTTCTGACAAAGGTAA 889
Query 1196 GTTAA 1200
|||||
Sbjct 890 GTTAA 894
> AT3G10790.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:3377410-3378369 FORWARD LENGTH=960
Length=960
Score = 139 bits (75), Expect = 6e-32
Identities = 432/596 (72%), Gaps = 58/596 (10%)
Strand=Plus/Plus
Query 409 TTTTCTCCACCCGTCCGCGGCTTGATCTGCCGTC--AA-AATGATACTACCGTGATCATT 465
||||||||||| || || |||||||||||| ||| || ||| ||||| ||| | |||
Sbjct 373 TTTTCTCCACCTGTTCGTGGCTTGATCTGCTGTCTAAACAATTCTACTAAAGTGGTAATT 432
Query 466 GGAAATCCTAGC-ACGGGCCAGTTCT-TAACTTTACCTAGAGTCA-AATCTAGGAGA-A- 520
|||||||||| | || | || || | ||||||||| ||||||| || | | | | |
Sbjct 433 GGAAATCCTA-CTACTTGTCAATT-TGAAACTTTACCGAGAGTCAGAA-CCAAAATATAC 489
Query 521 -GAGGTTTA-TTCTCCTTTTTTGGATATGATCCTGTGAATGATGAATACAAAGTGTTGTG 578
|| || ||| |||| |||||||| |||| ||| || |||||||||||||| |||||
Sbjct 490 CAAGAAATATTTC-CCTTCTTTGGATACGATCATGTTAAGGATGAATACAAAGTCTTGTG 548
Query 579 CATGACGGTACTACAAG-TTCGTCA-AAGACGTGA-ATCACG--A-GTTGTGGCCGAGGA 632
||||||| || | | | | || | | | || | |||| | | ||||| || ||||
Sbjct 549 CATGACGATA-T-C-GGATGAGT-ACTATA-GT-AGATCAGGAAATATTGTGTCCAAGGA 602
Query 633 GCATCAAGTTTTCACTCTAGGA-GCTAAAC--AA-AAATGGAGAAGGATCGAATGTAACC 688
|||| ||||||||||||||||| | ||||| || |||||||||| |||||||||| ||
Sbjct 603 GCATAAAGTTTTCACTCTAGGATG-TAAACAGAAGAAATGGAGAATGATCGAATGT-ACG 660
Query 689 A-TGATCATCT-TCCTCCTTCTTTAACTAAAGGGGTATGCATAAACGGTGTTGTTTATTA 746
| | ||||| | || | || || |||| |||| ||| | || || ||| | |||||
Sbjct 661 ATTAATCAT-TATCTTACTCCTGGAACTCAAGGAATATTTAGCAATGGGGTTATCTATTA 719
Query 747 -TTATGCTTGGATCAAAAGTGAAGGATC-TTTGATAA---GCTTTGATCTGATATCTGAA 801
|| ||| || || || || | |||| | | ||| |||||| | || ||||||
Sbjct 720 CTT-CGCTAGGGTC--AA-TG-ATGATCAGTCGCTAATGTGCTTTGTTGTGGGGTCTGAA 774
Query 802 GTGTTTAATGTCATTAAGTTACCTGA----GGATATCCAATG-CCTAGTGAACTACAATG 856
||||| |||| || ||||||| || || || || | |||| ||||||| |
Sbjct 775 AAGTTTAGTGTCGTTGAGTTACC-GAGGCCGGCCGTCGAA-GTTCTAGCGAACTACGGCG 832
Query 857 GAAAGATAGCTTTAGCGAGTTT-TTGTA----AATTA-GGTACACTTGACCTGTGGGTTC 910
|||||||||| || ||| ||| || || | | | | || |||| | ||| |||
Sbjct 833 AAAAGATAGCTGTAACGAATTTGTTATATGCTAGTAATGATAGACTTTTTGTATGGATTC 892
Query 911 TGGAAGATGCCAGCAAACAAGAATGGTCAAAAGTTTCTCTCTTGGTTCCTTCTTGG 966
| ||||||||||||||||||||||||||||| ||| | |||||||||||||||||
Sbjct 893 TAGAAGATGCCAGCAAACAAGAATGGTCAAACTTTTGTGTCTTGGTTCCTTCTTGG 948
> AT4G29970.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:14662765-14663917 REVERSE LENGTH=852
Length=852
Score = 124 bits (67), Expect = 2e-27
Identities = 148/185 (80%), Gaps = 14/185 (8%)
Strand=Plus/Plus
Query 1004 TCAGGGGTACACTTAGTACCGGGGAGCTTATATTTACACCGA-CTCGTCCAGTTA--GA- 1059
||| || |||||||||||||||||||||||||||| ||||| || | | ||| ||
Sbjct 647 TCAAGGATACACTTAGTACCGGGGAGCTTATATTTGCACCGTGCTT-T--A-TTACCGAT 702
Query 1060 CCGTTCTATTTTATCAGTTTCGATCTCAAGGAAAACAGTGCCAAAAAAGTTGTGGTTGAA 1119
||||||| |||||| ||| ||||||||||||||| ||||||| |||||||||| |||||
Sbjct 703 CCGTTCTTTTTTATTTGTTACGATCTCAAGGAAAAAAGTGCCAGAAAAGTTGTGATTGAA 762
Query 1120 GAAATTGGAGATAACTTTGCTAGTCTCGAAATCTATTTCGATCATGTGGAGAGTCCTATG 1179
| | |||| ||| ||| || || | || ||| || |||||||| ||||||||||||
Sbjct 763 GGACTTGGGGATGACTATGTTAATGTC----TCT-TTG-GATCATGTAGAGAGTCCTATG 816
Query 1180 GTTCT 1184
||||
Sbjct 817 TTTCT 821
Score = 86.1 bits (46), Expect = 7e-16
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 628 GAGGAGCATCAAGTTTTCACTCTAGGAGCTAAACAAAAATGGAGAAGGATCGAAT 682
|||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 385 GAGGAGCATCAAGTTTTCACTCTAGGAGCTAAACAAGAATGGAGAATGATTGAAT 439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5