BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928020

Length=1202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G29970.1 | Symbols:  | F-box and associated interaction doma...  63.9    3e-09


> AT4G29970.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr4:14662765-14663917 REVERSE LENGTH=852
Length=852

 Score = 63.9 bits (34),  Expect = 3e-09
 Identities = 83/105 (79%), Gaps = 9/105 (9%)
 Strand=Plus/Plus

Query  828  GTGAACTACAATGGAAAGATAGCTTTAACGAGACAGTACTCTAAATTA-GGTCCACTTTA  886
            ||||||||||||||||||||||||||||||||    ||||||   | | ||| ||||| |
Sbjct  550  GTGAACTACAATGGAAAGATAGCTTTAACGAGT---TACTCTTG-TAACGGTACACTTGA  605

Query  887  CCTGTGGATTCTGGA--A-GATGCCCGCAAACAAGAATGGT-CAA  927
            | ||||| || || |  | |||||  | ||||||||||||| |||
Sbjct  606  CTTGTGGGTTATGAAGGATGATGCTAGTAAACAAGAATGGTTCAA  650



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 59035840920


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5