BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928022
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04680.1 | Symbols: CLPS3 | CLP-similar protein 3 | chr3:126... 2303 0.0
> AT3G04680.1 | Symbols: CLPS3 | CLP-similar protein 3 | chr3:1269853-1272962
REVERSE LENGTH=1801
Length=1801
Score = 2303 bits (1247), Expect = 0.0
Identities = 1333/1375 (97%), Gaps = 3/1375 (0%)
Strand=Plus/Plus
Query 1 TCTTACCCTGAGTGAAAGCAATGGCTTACGGTGGT-C--CAATGAATCCACCGGCTTTGA 57
|||||| |||||||||||||||||| ||||||||| | | |||||||||||||||||||
Sbjct 247 TCTTACTCTGAGTGAAAGCAATGGCGTACGGTGGTCCGTCCATGAATCCACCGGCTTTGA 306
Query 58 GTGGCCCAGTTTCCGGGTCTGCTAATCTGAAGCAAGTGAAATTGGAGAGAGAAAGCGAGC 117
|||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GTGGAGCTGTTCCCGGGTCTGCTAATCTGAAGCAAGTGAAATTGGAGAGAGAAAGCGAGC 366
Query 118 TCAGGATCGAAGTCTCTGAAGAGCCTCTCAGACTCCGTGTCGTGAACGGAACGGCTGAGA 177
|||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||
Sbjct 367 TCAGGATCGAAGTCTCTGAAGAGCCTCTCAGACTCCGTGTGGTTAACGGGACCGCTGAGA 426
Query 178 TTTTTGGCTCTGAACTGCCTCCTGAAATATGGCGTACGTTCCCTCCTCGCATGAAATTTG 237
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 427 TTTTTGGCTCTGAACTGCCTCCTGAAATATGGCGTACCTTCCCTCCTCGCATGAAATTTG 486
Query 238 CGGTTTTCACTTGGTATGGAGCGACAATTGAGATGGATGGTGTCACGGAAACTGACTATA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 CGGTTTTCACTTGGTATGGAGCGACAATTGAGATGGATGGTGTCACGGAAACTGACTATA 546
Query 298 CGGCAGATGAGACACCGATGGTCAGCTACATTAATGTGCATGCCATACTAGATGCAAGGA 357
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 CAGCAGATGAGACGCCGATGGTCAGCTACATTAATGTGCATGCCATACTAGATGCAAGGA 606
Query 358 GACGTTTTGCCAAAGCTTCCACATCCAATGATCCAGAATCTTCTCAGGGACCTCGGGTTA 417
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 607 GACGTTTTGCCAAAGCTTCCACATCTAATGACCCAGAATCTTCTCAGGGACCTCGGGTTA 666
Query 418 TTGTAGTAGGGCCTACGGATTCCGGGAAGAGCACATTGACAAAGATGCTTCTTAGTTGGG 477
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 667 TTGTAGTAGGGCCTACGGATTCCGGGAAGAGCACATTGACAAAGATGCTCCTTAGTTGGG 726
Query 478 CAGCTAAACAGGGATGGAGACCTACATTTGTAGACCTTGATGTTGGCCAAGGCTCGATTA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 CAGCTAAACAGGGATGGAGACCTACATTTGTAGACCTTGATGTTGGCCAAGGCTCGATTA 786
Query 538 CAATACCAGGATGTATTGCTGCTGCCCCTATTGAAATGCCACTGGATCCAGTTGAAGGGT 597
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 CAATACCAGGATCTATTGCTGCTGCCCCTATTGAAATGCCACTGGATCCAGTTGAAGGGT 846
Query 598 TTCCTCTTGATATGGCCCTTGTGTACTACTGCGGCCATGCATCACCAAATATCAACGTTG 657
|||||||||||||||||||||| ||||||| |||||| |||||||||||||| |||||||
Sbjct 847 TTCCTCTTGATATGGCCCTTGTTTACTACTACGGCCACGCATCACCAAATATGAACGTTG 906
Query 658 AACTGTACAAAGCTCTGGTGAAAGAGCTGGCTCAAGTTCTGGAGAGACAGTTTGTCGGAA 717
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 907 AACTGTACAAAGCTCTGGTGAAAGAGCTTGCTCAAGTTCTGGAGAAACAGTTTGTCGGAA 966
Query 718 ACCCTGAATCTCGAGCTGCTGGAATGGTGATCAACACAATGGGATGGATCGAGGGTATTG 777
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 967 ACCCTGAATCGCGAGCTGCTGGAATGGTGATCAACACAATGGGATGGATCGAGGGGATTG 1026
Query 778 GTTATGAGCTGCTTCTCCACGCAATAGACACATTCAATGCCTCGGTTGTACTTGTATTGG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 GTTATGAGCTGCTTCTCCACGCAATAGACACATTCAATGCCTCGGTTGTACTTGTATTGG 1086
Query 838 GTCAGGAAAAACTCTTCAGCAGGCTTAAAGATGTGCTGAGAAGTAAGAGTAATGTCGACG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 GTCAGGAAAAACTCTTCAGCAGGCTTAAAGATGTGCTGAGAAGTAAGAGTAATGTCGACG 1146
Query 898 TCGTGAAACTTCACAAGTCTGGTGGAGTTGTAGCCAGGGTCAAAGAGGTCCGTAAAAGAT 957
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 TCGTGAAGCTTCACAAGTCTGGTGGAGTTGTAGCCAGGGTCAAAGAGGTCCGTAAAAGAT 1206
Query 958 CGAGGAATTTTAAGATTCAGGAATATTTTTACGGTTTATCGAAAGAACTATCTCCGTATG 1017
| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1207 CAAGGAACTTTAAGATTCAGGAATATTTTTACGGTTTATCGAAAGAACTCTCTCCGTATG 1266
Query 1018 CCAATACATCAAGTTTCAGTGATCTGCAAGTGTTCCGAATTGGTGGTGGACCACAAGCGC 1077
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 CCAATACATCGAGTTTCAGTGATCTGCAAGTGTTCCGAATTGGTGGTGGACCACAAGCGC 1326
Query 1078 CAAAGTCAGCTCTTCCAGCCGGGTCTACCTCGGTTTCAAATCCATTGCGGGTGACGCCTG 1137
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1327 CAAAATCGGCTCTTCCAGCCGGGTCTACCTCGGTTTCAAATCCGTTGCGGGTGACGCCTG 1386
Query 1138 TAAATATCGATGATCGGGATCTGCTGCATTCTGTTCTCGCTGTCTCGTACGCAGAAGAAC 1197
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1387 TAAATATCGATGATCGGGATCTGCTGCATTCTGTTCTTGCTGTCTCATACGCAGAAGAAC 1446
Query 1198 CAGACCAGATCATCTCAAGCAATGTTTCTGGGTTTGTGTATGTGACGGAAGTTAATGTGC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 CAGACCAGATCATCTCAAGCAATGTTTCTGGGTTTGTGTATGTGACGGAAGTTAATGTGC 1506
Query 1258 AGAAGAAGAAGATAACGTATTTAGCACCATCGCCTGGGACATTACCTAGCAAGTTGTTGG 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 AGAAGAAGAAGATAACGTATTTAGCACCATCGCCTGGGACATTACCTAGCAAGTTGTTGG 1566
Query 1318 TCGCTGGATCATTGACATGGCTTGAGTCAGTATGATTTATTTAGAGAAGAGAGGA 1372
|||||||||||||| |||||||||||||||||||| ||| |||||||||||||||
Sbjct 1567 TCGCTGGATCATTGGCATGGCTTGAGTCAGTATGACTTACTTAGAGAAGAGAGGA 1621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67569933570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5