BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928025
Length=193
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01380.1 | Symbols: | plastocyanin-like domain-containing p... 165 1e-40
AT3G04710.1 | Symbols: TPR10 | ankyrin repeat family protein | ... 78.7 2e-14
> AT4G01380.1 | Symbols: | plastocyanin-like domain-containing
protein | chr4:569148-570076 REVERSE LENGTH=633
Length=633
Score = 165 bits (89), Expect = 1e-40
Identities = 115/127 (91%), Gaps = 3/127 (2%)
Strand=Plus/Plus
Query 50 AGTCGTGGTCGGACCACTCACCAAAGCCATAACTTTCCCCAGTGTTCCGACGAAGATG-- 107
|||||||||||||||||||||||||||| || || |||||| |||||||||||||| |
Sbjct 507 AGTCGTGGTCGGACCACTCACCAAAGCCGTACCTGTCCCCAATGTTCCGACGAAGAAGAT 566
Query 108 -GAGTTGTCTCTTATGGACCGCTTCAACAGATGGTTACGCACCTTCAGACCTGAACCCCA 166
|||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 567 AGAGTTGTCACTTATGGACCGCTTCAACAGATGGTTACGCACCTTCGGACCTCAACCCCA 626
Query 167 TCACTAA 173
||| |||
Sbjct 627 TCATTAA 633
> AT3G04710.1 | Symbols: TPR10 | ankyrin repeat family protein
| chr3:1278079-1281118 FORWARD LENGTH=1697
Length=1697
Score = 78.7 bits (42), Expect = 2e-14
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 4 AGGGCTTTGTATCTGCCATGGCTCCTGATGCTTCTACTGCTCTAGCAG 51
||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 134 AGGGCTTAGTATCTGCCATGGCTCCTGATGCTTCTACTGCTCTTGCAG 181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8551229670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5