BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg928025 Length=193 Score E Sequences producing significant alignments: (Bits) Value AT4G01380.1 | Symbols: | plastocyanin-like domain-containing p... 165 1e-40 AT3G04710.1 | Symbols: TPR10 | ankyrin repeat family protein | ... 78.7 2e-14 > AT4G01380.1 | Symbols: | plastocyanin-like domain-containing protein | chr4:569148-570076 REVERSE LENGTH=633 Length=633 Score = 165 bits (89), Expect = 1e-40 Identities = 115/127 (91%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 50 AGTCGTGGTCGGACCACTCACCAAAGCCATAACTTTCCCCAGTGTTCCGACGAAGATG-- 107 |||||||||||||||||||||||||||| || || |||||| |||||||||||||| | Sbjct 507 AGTCGTGGTCGGACCACTCACCAAAGCCGTACCTGTCCCCAATGTTCCGACGAAGAAGAT 566 Query 108 -GAGTTGTCTCTTATGGACCGCTTCAACAGATGGTTACGCACCTTCAGACCTGAACCCCA 166 |||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 567 AGAGTTGTCACTTATGGACCGCTTCAACAGATGGTTACGCACCTTCGGACCTCAACCCCA 626 Query 167 TCACTAA 173 ||| ||| Sbjct 627 TCATTAA 633 > AT3G04710.1 | Symbols: TPR10 | ankyrin repeat family protein | chr3:1278079-1281118 FORWARD LENGTH=1697 Length=1697 Score = 78.7 bits (42), Expect = 2e-14 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 4 AGGGCTTTGTATCTGCCATGGCTCCTGATGCTTCTACTGCTCTAGCAG 51 ||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 134 AGGGCTTAGTATCTGCCATGGCTCCTGATGCTTCTACTGCTCTTGCAG 181 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8551229670 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5