BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928040
Length=607
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04790.1 | Symbols: | Ribose 5-phosphate isomerase, type A ... 883 0.0
AT3G04800.1 | Symbols: ATTIM23-3, TIM23-3 | translocase inner m... 845 0.0
> AT3G04790.1 | Symbols: | Ribose 5-phosphate isomerase, type
A protein | chr3:1313316-1315243 FORWARD LENGTH=1928
Length=1928
Score = 883 bits (478), Expect = 0.0
Identities = 569/612 (93%), Gaps = 10/612 (2%)
Strand=Plus/Minus
Query 1 GAAACGCAAAAGCCCTGACAATGGCGGATCCGACGAACCCTAGCACC-GGCGATCAACAA 59
|||||||| ||||||||| |||||||||||||| ||||| ||||||| ||| ||||||||
Sbjct 1750 GAAACGCAGAAGCCCTGATAATGGCGGATCCGATGAACCATAGCACCGGGC-ATCAACAA 1692
Query 60 CACCAGAAGTACCGTCAGTACAATCCCTACCAACAAGTCAATCTTCCGTACCGTCAGCTA 119
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1691 CAGCAGAAGTACCGTCAGTACAATCCTTACCAACAAGTCAATCTTCCGTACCGTAAGCTC 1632
Query 120 TACGAACTCCCAACTTCGCCGGAGTTTCTCTTCGAAGAAGAAGCTACGAAAAAACGCTTA 179
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1631 TACGAACTCCCAACTTCTCCTGAGTTTCTCTTCGAAGAAGAAGCTACGAAAAAACGCTTA 1572
Query 180 ACATGGGGAGAGAACCTCACCTTCTTCACCGGTTGGGGTTA-TGTCACTGGATCGGTTCT 238
||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||
Sbjct 1571 ACATGGGGAGAGAACCTCACCTTCTTCACCGGTTGGGGTTATTG-CACTGGATCTGTTCT 1513
Query 239 CGGAGCCGTCAAGGGTACATTTAAC-GGGATCG-GAGCCGCCGAAAGAGGCGAATCCCTA 296
||||||| ||||||||||| || | ||||| | ||||||||||| ||||||||||||||
Sbjct 1512 CGGAGCCTTCAAGGGTACAATT-GCGGGGAT-GCGAGCCGCCGAACGAGGCGAATCCCTA 1455
Query 297 AAGATCCGAACTAATCGGATTTTGAACTCCGGTGGACTCGTTGCAAGACGCGGCGGGAAT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 AAGATCCGAACTAATCGGATTTTGAACTCCGGTGGACTCGTTGCAAGACGCGGCGGGAAT 1395
Query 357 TGCTTAGGCTCTATTGGGTTGATGTTCGCAGCTATGGAGAGTGGTGTTACGTATCTGAGA 416
|||||||| || | ||||||||||| || ||||||||||| |||||||||||| |||||
Sbjct 1394 TGCTTAGGATCCGTAGGGTTGATGTTTGCTGCTATGGAGAGCGGTGTTACGTATATGAGA 1335
Query 417 GACGGAGACGACGGTTCGAGGACAACTGTCATCGCTGGTTTAGCCACTGGTGTGCTTTAC 476
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1334 GACGGAGACGACGGTTCGTTGACAACTGTGATCGCTGGTTTAGCCACTGGTGTGCTTTAC 1275
Query 477 AGAGCTGCTTCTGGACCTAGATCCGCTGTGGTTGCCGGAGCTGTCGGAGGAGTTACGGCT 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1274 AGAGCTGCTTCTGGACCTAGATCCGCTGTGGTTGCCGGAGCTGTCGGAGGAGTTGCGGCT 1215
Query 537 TTGGCGGCGGTTGCTGGGAGACGCATCGTCAAGCGATTCGTTCCAATCTGATGAGTA-TT 595
||||| || |||||||| ||||||||||||||||||||||||||||||| |||| | ||
Sbjct 1214 TTGGCTGCAGTTGCTGGAAGACGCATCGTCAAGCGATTCGTTCCAATCTAATGAA-AGTT 1156
Query 596 TCTCAATTTCTC 607
||||||| ||||
Sbjct 1155 TCTCAATCTCTC 1144
> AT3G04800.1 | Symbols: ATTIM23-3, TIM23-3 | translocase inner
membrane subunit 23-3 | chr3:1314479-1315045 REVERSE LENGTH=567
Length=567
Score = 845 bits (457), Expect = 0.0
Identities = 533/569 (94%), Gaps = 8/569 (1%)
Strand=Plus/Plus
Query 21 ATGGCGGATCCGACGAACCCTAGCACC-GGCGATCAACAACACCAGAAGTACCGTCAGTA 79
||||||||||||| ||||| ||||||| ||| |||||||||| |||||||||||||||||
Sbjct 1 ATGGCGGATCCGATGAACCATAGCACCGGGC-ATCAACAACAGCAGAAGTACCGTCAGTA 59
Query 80 CAATCCCTACCAACAAGTCAATCTTCCGTACCGTCAGCTATACGAACTCCCAACTTCGCC 139
|||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 60 CAATCCTTACCAACAAGTCAATCTTCCGTACCGTAAGCTCTACGAACTCCCAACTTCTCC 119
Query 140 GGAGTTTCTCTTCGAAGAAGAAGCTACGAAAAAACGCTTAACATGGGGAGAGAACCTCAC 199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGAGTTTCTCTTCGAAGAAGAAGCTACGAAAAAACGCTTAACATGGGGAGAGAACCTCAC 179
Query 200 CTTCTTCACCGGTTGGGGTTA-TGTCACTGGATCGGTTCTCGGAGCCGTCAAGGGTACAT 258
||||||||||||||||||||| || ||||||||| |||||||||||| |||||||||||
Sbjct 180 CTTCTTCACCGGTTGGGGTTATTG-CACTGGATCTGTTCTCGGAGCCTTCAAGGGTACAA 238
Query 259 TTAAC-GGGATCG-GAGCCGCCGAAAGAGGCGAATCCCTAAAGATCCGAACTAATCGGAT 316
|| | ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 TT-GCGGGGAT-GCGAGCCGCCGAACGAGGCGAATCCCTAAAGATCCGAACTAATCGGAT 296
Query 317 TTTGAACTCCGGTGGACTCGTTGCAAGACGCGGCGGGAATTGCTTAGGCTCTATTGGGTT 376
|||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 297 TTTGAACTCCGGTGGACTCGTTGCAAGACGCGGCGGGAATTGCTTAGGATCCGTAGGGTT 356
Query 377 GATGTTCGCAGCTATGGAGAGTGGTGTTACGTATCTGAGAGACGGAGACGACGGTTCGAG 436
|||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 357 GATGTTTGCTGCTATGGAGAGCGGTGTTACGTATATGAGAGACGGAGACGACGGTTCGTT 416
Query 437 GACAACTGTCATCGCTGGTTTAGCCACTGGTGTGCTTTACAGAGCTGCTTCTGGACCTAG 496
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GACAACTGTGATCGCTGGTTTAGCCACTGGTGTGCTTTACAGAGCTGCTTCTGGACCTAG 476
Query 497 ATCCGCTGTGGTTGCCGGAGCTGTCGGAGGAGTTACGGCTTTGGCGGCGGTTGCTGGGAG 556
|||||||||||||||||||||||||||||||||| |||||||||| || |||||||| ||
Sbjct 477 ATCCGCTGTGGTTGCCGGAGCTGTCGGAGGAGTTGCGGCTTTGGCTGCAGTTGCTGGAAG 536
Query 557 ACGCATCGTCAAGCGATTCGTTCCAATCT 585
|||||||||||||||||||||||||||||
Sbjct 537 ACGCATCGTCAAGCGATTCGTTCCAATCT 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29236273554
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5