BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928063
Length=1015
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04940.1 | Symbols: ATCYSD1, CYSD1 | cysteine synthase D1 | ... 1635 0.0
> AT3G04940.1 | Symbols: ATCYSD1, CYSD1 | cysteine synthase D1
| chr3:1365165-1367759 FORWARD LENGTH=1369
Length=1369
Score = 1635 bits (885), Expect = 0.0
Identities = 959/996 (96%), Gaps = 0/996 (0%)
Strand=Plus/Plus
Query 20 CATGGAGGAGGACCGGTGTTCTATCAAGGATGATGCAACTCAATTGATAGGTAACACCCC 79
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 143 CATGGAGGAGGACCGGTGTTCGATCAAGGATGATGCAACTCAATTGATAGGTAACACCCC 202
Query 80 AATGGTATATCTGAACAACATTGTGGATGGTTGTGTAGCCCGTATTGCAGCTAAGCTTGA 139
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 203 AATGGTATATCTGAACAACATTGTGGATGGTTGTGTAGCTCGTATTGCAGCTAAGCTTGA 262
Query 140 AATGATGGAGCCTTGCTCTAGTGTCAAGGAGCGAATTGCTTACGGTATGATTAAAGATGC 199
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 263 AATGATGGAGCCTTGCTCTAGTGTCAAGGAGCGAATTGCTTATGGTATGATTAAAGATGC 322
Query 200 AGAAGACAAGGGATTGATTACCCCCGGGAAGAGCACACTGATCGAGGCTACTTCTGGTAA 259
||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||
Sbjct 323 AGAAGACAAGGGATTGATTACTCCTGGGAAGAGCACACTGATTGAGGCTACCTCTGGTAA 382
Query 260 CACCGGGATTGGTTTAGCCTTCATCGGGGCAGCTAAAGGTTACAAAGTGGTCCTCACAAT 319
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 383 CACCGGGATTGGTTTAGCCTTCATCGGTGCAGCTAAAGGTTACAAAGTGGTCCTCACAAT 442
Query 320 GCCTTCAACAATGAGCCTTGAGAGAAAAATCATTCTTTTAGCATTAGGTGCAGAGGTTCA 379
||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 443 GCCCTCATCAATGAGCCTTGAGAGAAAAATCATTCTTTTAGCATTAGGTGCGGAGGTTCA 502
Query 380 CCTCACAGATCCTAGTAAAGGCGTTCAAGGAATAATCGACAAAGCTGAAGAGATTTGTAG 439
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 503 CCTCACAGATCCTAGTAAAGGCGTTCAAGGAATAATCGACAAAGCTGAAGAGATATGTAG 562
Query 440 CAAAACTCCAGATAGTATCATGCTAGAACAGTTCAAAAATCCTTCAAACCCGGAAACTCA 499
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 563 CAAAAATCCAGATAGTATCATGCTAGAACAGTTCAAAAATCCTTCAAACCCGCAAACTCA 622
Query 500 TTATCAAACCACGGGTCCAGAGATATGGAGAGACTCTGCAGGGGAAGTAGACATATTGGT 559
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TTATCGAACCACGGGTCCAGAGATATGGAGAGACTCTGCAGGGGAAGTAGACATATTGGT 682
Query 560 TGCCGGTGTTGGGACTGGTGGAACGCTTTCCGGATCAGGAAGGTTCCTCAAGGAGAAGAA 619
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 683 TGCCGGTGTTGGAACTGGTGGAACGCTTTCCGGATCAGGAAGATTCCTCAAGGAGAAGAA 742
Query 620 TAAAGACTTTAAGGTTTACGGTGTGGAACCTACAGAAAGTGCGGTAATCAGTGGAGGCAA 679
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 743 TAAAGACTTTAAGGTTTATGGTGTGGAACCTACAGAAAGTGCGGTAATAAGTGGAGGCAA 802
Query 680 ACCGGGTACACATTTGATCCAAGGTATTGGGGCTGGACTCATCCCAGACAATTTGGATTT 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 ACCGGGTACACATTTGATCCAAGGTATTGGGGCTGGACTCATCCCAGACAATTTGGATTT 862
Query 740 CAGCGTTCTTGATGAAGTCATTCAAGTGACAAGTGTGGAAGCAATTGAAACAGCCAAACT 799
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 863 CAACGTTCTTGATGAAGTCATCCAAGTGACAAGTGTGGAAGCAATTGAAACAGCCAAACT 922
Query 800 TCTTGCCTTGAAAGAAGGATTACTGGTGGGAATATCTTCCGGAGCTGCAGCCGCCGCTGC 859
||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 923 TCTTGCCCTGAAAGAAGGATTACTGGTGGGAATATCTTCTGGAGCTGCTGCAGCCGCTGC 982
Query 860 GATAAAGGTGGCAAAGCGGCCAGAAAACACCGGGAAACTCATAGTTGTGATTTTCCCCAG 919
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||
Sbjct 983 GATAAAGGTGGCAAAGCGGCCAGAAAACGCCGGCAAACTCATAGTTGTGATTTTCCCTAG 1042
Query 920 CGGCGGGGAACGGTACTTATCGACTTCGCTGTTCGAATCGGTCAGACATGAAGCAGAGAA 979
||| |||||||| ||| ||||||| || |||||||||| ||||||||||||||||||||
Sbjct 1043 CGGTGGGGAACGTTACCTATCGACCTCATTGTTCGAATCAGTCAGACATGAAGCAGAGAA 1102
Query 980 TTTGCCAATTCACTGAGGCTTTTACACTACCTGACT 1015
|||||||||||| |||||||||||||| ||||||||
Sbjct 1103 TTTGCCAATTCAATGAGGCTTTTACACGACCTGACT 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49731805530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5