BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928069
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04970.1 | Symbols: | DHHC-type zinc finger family protein ... 1999 0.0
> AT3G04970.1 | Symbols: | DHHC-type zinc finger family protein
| chr3:1376175-1378500 FORWARD LENGTH=1420
Length=1420
Score = 1999 bits (1082), Expect = 0.0
Identities = 1181/1228 (96%), Gaps = 9/1228 (1%)
Strand=Plus/Plus
Query 16 TACG-AAAATGGAGGTACAGTGGCTTTTGGTGTGTCACGGGATGATGACGTTAACGGTGG 74
|||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 58 TACGAAAAATGGCGGTACAGTGGCTTTTGGTGTGTCACGGGATGATGACGTTGACGGTGG 117
Query 75 TCATCTCCTTCCTCTGTGGTCAATGGCCAATCTTCAAAGGCACACCTTTTCAATGGATTC 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCATCTCCTTCCTCTGTGGTCAATGGCCAATCTTCAAAGGCACACCTTTTCAATGGATTC 177
Query 135 ACTACTTCATCACTTTCGGCGCTTACGATTACTTCCTGAGATTTGTCGGATTGGTGTTTG 194
|||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 178 ACTACTTCCTCACTTTCGGCGCCTACGATTACTTCCTGAGATTTGTCGGATTTGTGTTTG 237
Query 195 GTTCCAAGGGTACGGACGTGATTCTGTCTGTGGAGTATTTCTGCTGCGATCGTCCTAATC 254
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 238 GTTCCAAGGGTACGGACGTGATTCTTTCTGTGGAGTATTTCTGCTGCGATCGTCCTAATC 297
Query 255 CGATACTGCAAGTCATATATATAGCCATTATGGGATCAACCTACTTTTTGACTGCAAAAT 314
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CGATTCTGCAAGTCATATATATAGCCATTATGGGATCAACCTACTTTTTGACTGCAAAAT 357
Query 315 CTTCCTTCATCTATATACCTGGATATTATATTGGCGATGTTCACAAGTACACAAGCTTTC 374
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 358 CTTCTTTCATCTATATACCTGGATATTATCTTGGCGATGTTCACAAGTACACAAGCTTTC 417
Query 375 TAACTGTTATTGTTGGTGCCATACTTTTCTTATTAACTA-GCTTTTCTGATCCAGGTACT 433
|| ||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||
Sbjct 418 TAGCTGTTATTGTTGGTGTCATACTTTTCTTATTAAC-ATGCTTTTCTGATCCAGGTACT 476
Query 434 GTGAACGCTGAGAATGTTTCACGGTACATTTCTGCTTACCCCTATGATGATATCATTTAC 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GTGAACGCTGAGAATGTTTCACGGTACATTTCTGCTTACCCCTATGATGATATCATTTAC 536
Query 494 TCGAAGAAAGAATGTTCTACGTGTAAAATCCCAAAGCCTGCTAGATCCAAGCATTGCAGC 553
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TCCAAGAAAGAATGTTCTACGTGTAAAATCCCAAAGCCTGCTAGATCCAAGCATTGCAGC 596
Query 554 ATCTGCAACCGCTGTGTGGCTCGGTTTGATCATCATTGTGGGTGGATGAATAACTGTATA 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ATCTGCAACCGCTGTGTGGCTCGGTTTGATCATCATTGTGGGTGGATGAATAACTGTATA 656
Query 614 GGCGAAAGGAATACCAAATATTTCATGGCTTTCCTCTTGTGGCATTTCCTTCTTTGCTTG 673
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GGAGAAAGGAACACCAAATATTTCATGGCTTTCCTCTTGTGGCATTTCCTTCTTTGCTTG 716
Query 674 TACGGAACAGTAGCCATCGGGTTTATTCTTGCTGGGCGAGTAAAAGAACTCCGTGTTGTA 733
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 717 TACGGAACAGTTGCCATCGGATTTATTCTTGCTGGGCGAGTAAAAGAACTCCGTGTTGTA 776
Query 734 CATATTTTAACTGTCTATTACGGCGTAGATAAATCTTTTCGAAGCTTAGCTCCTCGAGTT 793
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 777 CATATTTTAACTGTCTATTACGGTGTAGATAAATCTTTCCGAAGTTTAGCTCCTCGAGTT 836
Query 794 TTACAGTGGCTAGTTGGTACATACAACACCCAGATTCTCCTAATGGTGTTTCTCGCCATT 853
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 837 ATACAGTGGCTAGTTGGTACATACAACACCCAAATTCTCCTAATGGTGTTTCTCGCCATT 896
Query 854 GTTTCTCTCCTCCTCGCTGGCTTCTTCGCTTACCACGCAAATCTCTGCTTAACCAACACA 913
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 897 GTTTCTCTCCTCCTCGCTGGCTTCTTCGCTTACCATGCAAATCTCTGCTTAACCAACACA 956
Query 914 ACAACTAATGAGACGTTTAAGTGGAGAGAGTATATAAGCTTGAAGAAGAGGCTCAGTGAA 973
||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct 957 ACAACTAATGAGACGTTTAAGTGGAGAGAGTATATAAGCTTAAATAAGAAGCTCAGTGAA 1016
Query 974 GCTAAGGCGAGCGCTGCTGCTCTCAAGGCCGGAATGTCATGTGAA-TCAAAGAAGCCAAC 1032
|||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| |
Sbjct 1017 GCTAAGGCGAGCGCTGCTGCTCTCAAGGCCGGGATGTCATGTGAACT-AAAGAAGCCATC 1075
Query 1033 AGCTGCAAGCAAATGCTTCGGGATTTGTGGAAGATCCTCTGCCCATGAAGAAGGAGAAGC 1092
||||| |||||||||||||||| ||||||||||||||||||||| |||||||| | | |
Sbjct 1076 AGCTGAAAGCAAATGCTTCGGGCTTTGTGGAAGATCCTCTGCCCGTGAAGAAG-A-A-GT 1132
Query 1093 CAAAGCCGAAGCGATAGTGAAACGGAATTTGTATGATAGAGGAAGTTTTCAAAACGTTTC 1152
||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 CAAAGCCGACGCTATAGCGAAACGGAATTTGTATGATAGAGGAAGTTTTCAAAACGTTTC 1192
Query 1153 TGAGATTGTTTTCCCTTTATCATCAAGACCATCTTCTTCCAGCAAATCAAAACGAAAATC 1212
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1193 TGAGATTGTTTTCCCTTTATCATCAAGACCATCTTCTTCCAACAAATCAAAACGAAAATC 1252
Query 1213 GGAATAGTTCGTCCTTT-CTTACATGTA 1239
||||||||| ||| ||| |||| |||||
Sbjct 1253 GGAATAGTTAGTCTTTTTCTTATATGTA 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60893261085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5