BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928093

Length=700
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G49170.1 | Symbols: EMB2261 | Tetratricopeptide repeat (TPR)...   230    2e-59
  AT5G11950.1 | Symbols:  | Putative lysine decarboxylase family ...   195    7e-49
  AT3G61540.1 | Symbols:  | alpha/beta-Hydrolases superfamily pro...  60.2    3e-08


> AT3G49170.1 | Symbols: EMB2261 | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr3:18226911-18229610 REVERSE 
LENGTH=2606
Length=2606

 Score =  230 bits (124),  Expect = 2e-59
 Identities = 140/148 (95%), Gaps = 0/148 (0%)
 Strand=Plus/Plus

Query  1    CGGTTTCAGCTCTTGATCTCATGGCTCGTGATGGGATTCGTCCCATGGACTCAGTCACTT  60
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  144  CGGTTTCAGCTCTTGATCTCATGGCTCGTGATGGGATTCGTCCTATGGACTCAGTCACTT  203

Query  61   TCTCTTCACTCCTCAAATCTTGTATCCAAGCACGCGATTTTTGGCTCGGAAAACTCGTTC  120
            |||||||||| |||||||||||||||| ||||||||||||| | ||||| |||||||| |
Sbjct  204  TCTCTTCACTTCTCAAATCTTGTATCCGAGCACGCGATTTTCGTCTCGGGAAACTCGTAC  263

Query  121  ACGCTCGATTAATCGAGTTTGAGATCGA  148
            |||||||||||||||||||||| |||||
Sbjct  264  ACGCTCGATTAATCGAGTTTGATATCGA  291


 Score =  135 bits (73),  Expect = 4e-31
 Identities = 81/85 (95%), Gaps = 0/85 (0%)
 Strand=Plus/Plus

Query  233  GAAGACTGGGTATTTTGAATCTGATGTCTGTGTGGGTTGTTCTTTGATTGACATGTTTGT  292
            |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  589  GAAGACTGGGCATTTTGAATCTGATGTGTGTGTGGGTTGTTCTTTGATTGACATGTTTGT  648

Query  293  GAAAGGGGAGAATAGTTTTGAGAAT  317
            |||||| |||||||| |||||||||
Sbjct  649  GAAAGGAGAGAATAGCTTTGAGAAT  673


> AT5G11950.1 | Symbols:  | Putative lysine decarboxylase family 
protein | chr5:3854968-3856983 FORWARD LENGTH=923
Length=923

 Score =  195 bits (105),  Expect = 7e-49
 Identities = 117/123 (95%), Gaps = 0/123 (0%)
 Strand=Plus/Plus

Query  404  GGTTGGTCTACTGAATGTTGATGGATACTATAACAATTTGCTTGCTTTATTTGACACCAG  463
            |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct  515  GGTTGGTCTATTGAATGTTGATGGGTACTATAACAATTTGCTTGCTTTATTTGATACCGG  574

Query  464  TTTCGAAGAAGGTTTTATCAAGCCAGGTGCACGTAACATTTTGGTTTCTGCTCCAACAGC  523
            | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  575  TGTCGAAGAAGGTTTTATCAAGCCAGGTGCACGTAACATTGTGGTTTCTGCTCCAACAGC  634

Query  524  CAA  526
            |||
Sbjct  635  CAA  637


> AT3G61540.1 | Symbols:  | alpha/beta-Hydrolases superfamily protein 
| chr3:22773386-22775827 FORWARD LENGTH=1689
Length=1689

 Score = 60.2 bits (32),  Expect = 3e-08
 Identities = 35/36 (97%), Gaps = 1/36 (3%)
 Strand=Plus/Plus

Query  575  TGGATGGATTCAAAGAGCTTGTGAAGAGTTTC-AGT  609
            |||||||||||||||||||||||||||||||| |||
Sbjct  427  TGGATGGATTCAAAGAGCTTGTGAAGAGTTTCGAGT  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33908049225


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5