BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928101
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05180.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1982 0.0
> AT3G05180.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr3:1468398-1470551 REVERSE LENGTH=1363
Length=1363
Score = 1982 bits (1073), Expect = 0.0
Identities = 1202/1264 (95%), Gaps = 9/1264 (1%)
Strand=Plus/Plus
Query 4 AAAATACATTG-TTTGAGCCATGGAAACTCTTTTCCACACTCTTCTTACATTATTACTAT 62
||| || |||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3 AAATTATATTGTTTTGAGCCATGGAAACTCTTTTCCACACTCTTCTTAGATTATTACTAT 62
Query 63 TCGTAGCCATCTCTCATACTCT-ACCTCCTCTCGCCGGTTCTTTCCCGATTTCTAAT-AT 120
|||||||||||||||||||||| || ||||||||||||||||||| |||||||||| |
Sbjct 63 TCGTAGCCATCTCTCATACTCTGTCC-CCTCTCGCCGGTTCTTTCCGGATTTCTAATGAC 121
Query 121 TTTCCCGGCGGTTTTCAACTTCGGAGACTCTAACTCCGACACCGGAGAACTTAGCTCCGG 180
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 122 TTT-CCGGCGGTTTTCAACTTCGGAGACTCTAACTCTGACACCGGAGAACTTAGCTCGGG 180
Query 181 TCTTGGATTTCTTCCACAGCCTTCCTATGAAAAAACCTACTTCAGATCTCCAACTTCCGG 240
||||||||| |||||||| ||||||||||||| ||||| ||| |||||||||||||||||
Sbjct 181 TCTTGGATTCCTTCCACAACCTTCCTATGAAATAACCTTCTTTAGATCTCCAACTTCCGG 240
Query 241 AAGATTCTGCAATGGACGTCTTATCGTCGATTTTCTAATGGAAGCAATTGATCGGCCCTA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 241 AAGATTCTGCAATGGACGTCTTATCGTCGATTTTCTAATGGAAGCAATTGATCGACCATA 300
Query 301 TTTGAGGCCTTATTTAGATTCGATAAGTCGACAAAGTTACCGGAGAGGCTGCAATTTTGC 360
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 301 TTTGAGGCCTTATTTAGATTCGATAAGTCGACAAACTTACCGAAGAGGCTGCAATTTTGC 360
Query 361 GGCGGCTGCGTCAACGATTCAGAAGGCGAATGCTGCATCCTATAGTCCCTTTGGTTTTGG 420
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 361 TGCGGCTGCGTCAACGATTCAGAAGGCAAATGCTGCATCCTATAGCCCCTTTGGTTTTGG 420
Query 421 TGTTCAAGTTTCTCAATTCATCACCTTTAAGTCCAAAGTCCTTCAATTGATACAACAAGA 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGTTCAAGTCTCTCAATTCATCACCTTTAAGTCCAAAGTCCTTCAATTGATACAACAAGA 480
Query 481 TGAAGAGCTCGGAAGATACTTACCGTCTGAATATTATTTCAAAAAAGGATTATATATGTT 540
|||||||||| ||||||||||||||| ||||||| ||| | || ||||| ||||||||
Sbjct 481 TGAAGAGCTCCAAAGATACTTACCGTCCGAATATTTTTTTAGTAATGGATTGTATATGTT 540
Query 541 TGATATCGGACAAAATGATATTGCCGGAGCATTTTACACCAAGACATTTGATCAAGTTCT 600
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 541 TGATATCGGACAAAATGATATTGCCGGAGCATTTTACACCAAGACAGTAGATCAAGTTCT 600
Query 601 TGCTCTGGTTCCTACAATCTTAGATATATTTCAAGATGGAATAAAGAGATTATATGCAGA 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGCTCTGGTTCCTATAATCTTAGATATATTTCAAGATGGAATAAAGAGATTATATGCAGA 660
Query 661 AGGGGCAAGAAACTATTGGATACACAACACAGGACCACTTGGGTGTTTAGCACAAGTTGT 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGGGGCAAGAAACTATTGGATACACAACACAGGACCACTTGGGTGTTTAGCACAAGTTGT 720
Query 721 GTCA-TTATTTGGGAAAGACAAATCAAAGCTTGATGAGTTTGGTTGTGTCAGTGACCATA 779
|||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTCAATT-TTTGGGGAAGACAAATCAAAGCTTGATGAGTTTGGTTGTGTCAGTGACCATA 779
Query 780 ACCAAGCCGCTAAACTTTTCAATTTGCAGCTTCATGATCTTTTCAAAAAACTCCCTCACC 839
||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 780 ACCAAGCTGCTAAGCTTTTCAATTTGCAGCTTCATGGTCTTTTCAAAAAACTCCCTCAAC 839
Query 840 AATATCCCGATTCCCGCTTCACATACGTAGATATCTTCTCTATCAAATCCGACCTCATCC 899
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AATATCCCAATTCCCGTTTCACATACGTAGATATCTTCTCTATCAAATCCGACCTCATCC 899
Query 900 TGAATCCTTCCAAATATGGTTTTGATCATTCGATAATGGTATGTTGTGGAACGGGAGGAC 959
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 900 TGAATCATTCCAAATATGGTTTTGATCATTCGATAATGGTATGTTGTGGAACCGGAGGAC 959
Query 960 CGCCATTAAACTACGATGATCAGGTTGGTTGCGGTAAGACAGCAAGATCAAATGGTACGA 1019
| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CACCACTGAACTACGATGATCAGGTTGGTTGCGGTAAGACAGCAAGATCAAATGGTACGA 1019
Query 1020 TCAAAACCGCCAAACCTTGTTATGATAGTTCCAAATATGTCAACTGGGACGGCATTCATT 1079
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1020 TCATAACCGCCAAACCTTGTTATGATAGTTCCAAATATGTTAACTGGGACGGCATTCATT 1079
Query 1080 ACACTGAAGCTGCAAATCGGTTTGTTGCGCTACACATTCTCACCGGTAAATACTCTGAGA 1139
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1080 ACACTGAAGCTGCAAATCGGTTTGTTGCACTACACATTCTCACCGGTAAATACTCTGAGA 1139
Query 1140 CGGCGTCGTCTTTGAATCTTTAGCAATGTAACAAAGAAAGTTACATTATCATTTTCTTTA 1199
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1140 CGGCGTCATCTTTGAATCTTTAGCAATGTAACAAAGAAAGTTACATTATCACTTTCTTTA 1199
Query 1200 TTGATTACATATATCTATTTAGTTGTATGTTAACTGGTTTATTTATGAGTATATGAATAA 1259
| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1200 TGGATTACATATAT--ATTTAGTTGTATGTTAACTGGTTTATTTATGATTATATGAATAA 1257
Query 1260 TTTC 1263
||||
Sbjct 1258 TTTC 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62098074165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5