BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928106
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05220.1 | Symbols: | Heavy metal transport/detoxification ... 1081 0.0
> AT3G05220.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr3:1488595-1491320 FORWARD LENGTH=2096
Length=2096
Score = 1081 bits (585), Expect = 0.0
Identities = 723/785 (92%), Gaps = 28/785 (4%)
Strand=Plus/Plus
Query 262 GATGCCAAAAGTAGTGGGTGG-GGCCTTCTAGGGTTTTTCAAAAAGGGTAAAAGTGGAAA 320
|||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1186 GATGCCAAAAGTGGT-GGTGGTGGCCTTCTAGGGTTTTTCAAAAAGGGTAAAAGTGGGAA 1244
Query 321 AGGAGATGAGAAGAAGGGCGCTGGGAAGAAAGATGGTCATGGGGGTAATAAGGTCAAATC 380
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1245 CGGAGATGAGAAGAAGAGCGCTGGGAAGAAAGATGGCCATGGGGGTAATAAGGTCAAATC 1304
Query 381 TCCTAGTGGGGGAGGAGGAGTTCAGCATTATGATAGTGGGCCTAAAAAAGGGGGAGGT-G 439
|| | |||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 1305 TCATGGTGGGGGAGGAGGAGTTCAGCATTATGATAGTGGGCCTAAAAAAGGTGGTGGTGG 1364
Query 440 GATCCAAAGGAGGAGCCCATGGAGGTCTTGACATTGATGAGCTCATGAAACACAGTAGTA 499
|| |||||||||||| |||||| || ||||||||||||||||||||||||||| || |
Sbjct 1365 GA-CCAAAGGAGGAGGCCATGGGGGCCTTGACATTGATGAGCTCATGAAACAC---AGCA 1420
Query 500 AaggaggaggaggaggaggTAACAAGGGCAATCATAATCATAGCGCAAAAGGTA-T--TG 556
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | | ||
Sbjct 1421 AAGGAGGAGGAGGAGGAGGTAACAAGGGCAATCATAATCATAGCGCCAAAGGGATTGGTG 1480
Query 557 GTGGCCCAATGGGTCCAGGTGGTCCAATGGGTCAAGGCGGTCCGATGGGTCCAGGTGGTC 616
||||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||
Sbjct 1481 GTGGCCCAATGGGTCCAGGCGGTCCGATGGGTCCAGGCGGTCCGATGGGTCAAGGTGGTC 1540
Query 617 C---------GATGGGTCCAGGCGGTCCGATGGGTATGATGGGTCCAGGCGGTCCTATGG 667
| |||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1541 CGATGGGTATGATGGGTCCAGGTGGTCCGATGAGTATGATGGGTCCAGGCGGTCCTATGG 1600
Query 668 GTCCAATGGGTGGCCAAGGCGGCTCTTACCAAGCGGTTCAAGGCTTGCCGATGAGTGGAG 727
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1601 GTCCAATGGGTGGCCAAGGCGGCTCTTACCCAGCGGTTCAAGGCTTGCCAATGAGTGGAG 1660
Query 728 GTGGAGGATATTATCCGGGGCCGCCTCAGGCAAGTCATcaaatgaaccaacaacaatata 787
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1661 GTGGAGGATATTATCCAGGGCCGCCTCAGGCAAGTCAGCAAATGAACCAACAACAATATA 1720
Query 788 tgcaaatgatgatgaa-c--cagcag------caacaacaacaacaaGCTGCAGCTCATG 838
|||||||||||||||| | |||||| ||||||||||||||||||| ||||||||
Sbjct 1721 TGCAAATGATGATGAACCAACAGCAGCAACAACAACAACAACAACAAGCTGTAGCTCATG 1780
Query 839 GAGGCTATGGTGGTGGTCACGGTGGAGACATGTACCATCCGATGATGTACGCTAGGCCTT 898
| |||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1781 GTGGCTATGGCGGTGGTCACGGTGGCGACATGTACCATCCGATGATGTACGCTCGGCCTT 1840
Query 899 ATCCTGCAGTTAATTATGCTCACCCGCCACCGATGCCGCCTCCTCACTCGGATTCTTATA 958
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1841 ATCCTGCAGTTAATTATGCTCACCCTCCACCAATGCCGCCTCCTCACTCGGATTCTTATA 1900
Query 959 CTCATATGTTCAGCGATGAGAATCCAGGTAGTTGTAGTATCATGTGATCATCTTGTGTAA 1018
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1901 CTCATATGTTCAGCGATGAGAATCCAGGTAGTTGTAGTATTATGTGATCATCTTTTGTAA 1960
Query 1019 TGTTA 1023
|||||
Sbjct 1961 TGTTA 1965
Score = 422 bits (228), Expect = 4e-117
Identities = 249/259 (96%), Gaps = 1/259 (0%)
Strand=Plus/Plus
Query 1 ACACACAAATCCAAGAG-AGTTATGAATAAACAAGATGTTATGAAACTTCAGACTTGTGT 59
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 ACACACAAATCTAAGAGAAGTTATGAATAAACAAGATGTTATGAAACTTCAGACTTGTGT 251
Query 60 TCTGAAAGTGAACGTACACTGTGAAGGGTGTAAGCATAAAGTGAAGAAACAATTGCAGAA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 TCTGAAAGTGAACGTACACTGTGAAGGGTGTAAGCATAAAGTGAAGAAACAATTGCAGAA 311
Query 120 AATCGAAGGCGTTTACTCTGTCAAAGCAGATGTAGAACAGGGGAGAGTCACTGTTACAGG 179
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 312 AATCGAAGGTGTTTACTCTGTAAAAGCAGATGTAGAACAGGGGAGAGTTACTGTTACAGG 371
Query 180 CAACGTTGACCCAGCTCTTCTGGTTAAGAAACTGAGCAAATCAGGCAAACATGCCGAGAT 239
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 372 GAACATTGACCCAGCTCTTCTGGTTAAGAAACTTAGCAAATCAGGCAAACATGCCGAGAT 431
Query 240 CTTGGGCGGTGGCGGAGGA 258
||| |||||||| ||||||
Sbjct 432 CTTAGGCGGTGGTGGAGGA 450
Score = 73.1 bits (39), Expect = 5e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 601 ATGGGTCCAGGTGGTCCGATGGGTCCAGGCGGTCCGATGGGT 642
||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1489 ATGGGTCCAGGCGGTCCGATGGGTCCAGGCGGTCCGATGGGT 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50234147000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5