BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928115

Length=617
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05300.1 | Symbols:  | Cytidine/deoxycytidylate deaminase fa...   638    0.0  


> AT3G05300.1 | Symbols:  | Cytidine/deoxycytidylate deaminase 
family protein | chr3:1508024-1508611 REVERSE LENGTH=466
Length=466

 Score =  638 bits (345),  Expect = 0.0
 Identities = 426/466 (91%), Gaps = 1/466 (0%)
 Strand=Plus/Plus

Query  135  TAGGGACCATAAATATTTAACCCAAGCTGTTGAAGAGGCATATATTGGAGTTGAGTGTGG  194
            ||||| | |||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  2    TAGGGGCGATAAATTTTTAAGCCAAGCTGTTGAAGAGGCATATATTGGAGTTGAGTGTGG  61

Query  195  TGATGGCCGTCCGTTTGGAGCGGTTATTGTTCATAAGAACGAAATTTTAGTGAGCTGCCA  254
            ||||||   ||||||||| || |||||||||||||||||||| ||| |||||||||||||
Sbjct  62   TGATGGTTATCCGTTTGG-GCTGTTATTGTTCATAAGAACGATATTGTAGTGAGCTGCCA  120

Query  255  TAATATGGTTTTGAAATACAAAGATCCAACGGCACATGCTGAAATCATAGCCATTAGAGA  314
             || |||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct  121  CAACATGGTTTTCAAATACAAAGATCCAACGGCACATGCAGAAGTCATAGCCATTAGAGA  180

Query  315  GGCTTGCAAGAAACTGAATGAAATTAAGCTATCGGAATGTGAGCTTTACGCATCATGCGA  374
            ||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct  181  GGCATGCAAGAAACTGAATGAAATTAAGCTATCGGAATGCGAGATTTACGCATCATGCGA  240

Query  375  GCCTTGTCCGATGTGTTTTGGAGCCATCCATCTCTCAAGACTCAAGAGATTGGTGTATGG  434
            ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | 
Sbjct  241  GCCTTGTCCCATGTGTTTTGGAGCCATCCATCTCTCAAGGCTCAAGAGATTGGTGTACGA  300

Query  435  GGCGAAAGCCGAAGCAGCAGTAGCCATTGGATTCAACAGCATCATAGCGGACGGTGTGAG  494
            |||||||| |||||||||  |||||||||| ||||| || ||| |||| || ||||||||
Sbjct  301  GGCGAAAGTCGAAGCAGCTTTAGCCATTGGGTTCAATAGGATCTTAGCAGATGGTGTGAG  360

Query  495  AGGCATTGGGTGCTACCATAAGTCTAACCTAGAGATTAAAAAACTCGATGTGAGTATCGC  554
            |||| |||||||||||||||| |||||||||||||||| |||||||||| ||||||||||
Sbjct  361  AGGCGTTGGGTGCTACCATAACTCTAACCTAGAGATTACAAAACTCGATCTGAGTATCGC  420

Query  555  GGAGCAAGTGTTCCAGAATACAAAGGGGAAGTTCAGTATATAGTAA  600
             ||||||||||| |||||||||||||||||||||||| ||| ||||
Sbjct  421  CGAGCAAGTGTTTCAGAATACAAAGGGGAAGTTCAGTTTATCGTAA  466



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29738615024


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5