BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg928119 Length=1486 Score E Sequences producing significant alignments: (Bits) Value AT3G05330.1 | Symbols: ATN, ATTAN | cyclin family | chr3:151888... 2154 0.0 > AT3G05330.1 | Symbols: ATN, ATTAN | cyclin family | chr3:1518882-1521494 REVERSE LENGTH=1950 Length=1950 Score = 2154 bits (1166), Expect = 0.0 Identities = 1388/1490 (93%), Gaps = 36/1490 (2%) Strand=Plus/Plus Query 3 AAGATAA-ATATATAGAAGATGGTTGCAAGAACCCCACAAAAGCAGAGGAAAGTGGCGAT 61 |||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 317 AAGAAAATATATATAGAAGATGGTTGCAAGAACCCCACAGAAGCAGAGGAAAGTGGCGAT 376 Query 62 GGTGGTGCCTCCTCTCAACTCAGATCTTCTCAAGGAAACAATCAACAAGGTTGACAAATG 121 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 377 GGTGGTGCCTCCTCTCAACTCAGATCTTCTCAAGGAAACGATCAACAAGGTTGATAAATG 436 Query 122 TATGGAAAGACTGCAAGAGCTACAGTACACAATTGCAGGAGGAACCAAAGTTGTCTCCGG 181 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 437 TATGGAAAGACTGCAAGAGCTACAGTACACAATTGCAGGAGGAACCAAAGTTGTCTCTGG 496 Query 182 TGTGAACCTTAGCCCTCGAAGTACTAGAACTTACTTGAGGACTAGTCTTAGATGCAAGCA 241 ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| Sbjct 497 TGTGAACCTTAGCCCTCGAAGCACTAGAATTTACTTGAAGACTAGTCTTAGATGCAAGCA 556 Query 242 AGAAACTTTAAGGATCAAGAGTGCTACTAATAAGAAATCTCCAGTAGGGAAGTTTCCAGC 301 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 557 AGAAACTTTAAGGATCAAGAATGCTACTAATAAGAAATCTCCAGTAGGGAAGTTTCCTGC 616 Query 302 TTCCTCACCAGGAGATTGGAGGAAAATGTCACTCCCAGCAATGCTACTAGGAGAGACTGT 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 617 TTCCTCACCAGGAGATTGGAGGAAAATGTCACTCCCAGCAATGCTACTAGGAGAGACTGT 676 Query 362 AAATGAAATCTTACAAGCCTCACAGGTCACAAGAGACATTGTAGAAGCCATAGCACCAAA 421 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 677 AAATGAAATCTTACAAGCCTCACAGGTCACAAGAGACATTGTGGACGCCATAGCACCAAA 736 Query 422 GAAGAGTAGAAAGTCCAGGAGATTAACAATGTCACAAGAAGACGATGGCCCTAAAACACC 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 737 GAAGAGTAGAAAGTCCAGGAGATTAACAATGTCACAAGAAGACGATGGCCCTAAAACACC 796 Query 482 TGAGACAGAACGAAAATCCCGGGAACCGAACCACCCTGAAACTGTCAGTAGCAATATCAA 541 |||||| ||| |||||||||||||| | | | |||||||||||||||||||||||||| Sbjct 797 CGAGACACAACAAAAATCCCGGGAACAG-A--ATCCTGAAACTGTCAGTAGCAATATCAA 853 Query 542 AGCGAGAAGGAAGAAAGAAAAGCAGAACAGACGTTCAGGATCAGATTCTCCTCCATCTCA 601 ||| |||||||||||||| |||||||||||||| |||| |||||||||||||||||||| Sbjct 854 AGCAAGAAGGAAGAAAGAGAAGCAGAACAGACGATCAGAATCAGATTCTCCTCCATCTCT 913 Query 602 ACAAAGGGCACGCTCAAGAATTGCGTTCAGAACCGTGTCTCCACAGAAAATAGCAGGGAA 661 |||||||||||||||||||||||||||||||||| | ||||||| | || | || Sbjct 914 ACAAAGGGCACGCTCAAGAATTGCGTTCAGAACCATCTCTCCAC-----A-AGTA---AA 964 Query 662 GGTTCAGGAAAAGGGAAATGGTGAGAATAGTTTTCGGCATTTGGCTAACAGGGTTTCACC 721 | || ||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 965 -G----GG-AAA---TAATGGTGAGAATAGTTTTCGGCATTTGGCCAACAGGGTTTCACC 1015 Query 722 AAAGCACAAACCTTGGGTTAAAAAGGCGGTTCTTTTTCCGAACCCTCTGTTTATTTCTGG 781 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 1016 AAAGCACAAACCTTGGGTTAAAAAGGCGGTTCTTTTTCCGAACCCTCTATTTATTTCCGG 1075 Query 782 TACCACTACACAACAAGCCAAGTTCAGTAGAACAATGTCTCCGGTCATAGCCAGAAATGA 841 |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1076 TACCGCTACACAACAAGCAAAGTTCAGTAGAACAATGTCTCCGGTCATAGCCAGAAATGA 1135 Query 842 GATATCCAGCATCAAGAACAATAAAGAGACGCCACACAAGTTCTTGATCAAATCTCCTAC 901 ||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| | Sbjct 1136 GATATCCAGCATCAAGAACAATAAAGAAACGCCTTACAAGTTCTTAATCAAATCTCCTCC 1195 Query 902 CACATCAGCATCTAAGTTTCAGGTCAAGATCAGGAGCCCACCTAAGGTCTTGGTTTCTCC 961 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 CACATCAGCATCTAAGTTTCAGGTCAAGATCAGGAGCCCACCTAAGGTCTTGGTTTCTCC 1255 Query 962 TACAAGAAATGGCAGTAACTTGGTTCGGAGGTCACCTAAAGGCTCCAGTTCTCCGACAAG 1021 |||||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||||| Sbjct 1256 TACAAGAAATGGCAGTAACTCGGTTCGGAAGTCACCTAGAGGCTCCAGGTCTCCGACAAG 1315 Query 1022 AAAC-GTTAACATAGGAAAGAAGTCGCCTACCGCGTCGATTTCTCCTATTAGAAACTT-G 1079 || | |||||| ||||||||||||| | ||||||||||||||||||||||| | | Sbjct 1316 AA-CTGTTAACTTAGGAAAGAAGTC----A--GCGTCGATTTCTCCTATTAGAAA-TACG 1367 Query 1080 GGAAAGAAGTCTCCAAAGCTATCAACTGCTGCTAAGCTCAGAAGATCATTTACTCCTACG 1139 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1368 GGAAAGAGGTCTCCAAAGCTATCAACTGCTGCTAAGCTCAGAAGATCATTTACTCCTACG 1427 Query 1140 AGAAATGGCAGTAACTTGGCCCGTAAGTCGTCCATTTCTCCGAAAAGAGTCACGCTTCAA 1199 |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||| Sbjct 1428 AGAAATGGCAGTAACTTGGCTCGTAAGTCGTCTATTTCTCCGAAAAGAGTCACACTTCAA 1487 Query 1200 GCATTTCTTTCTCCCACAAGAAATGGTAACTTTTGTAAGACGTCACCCAAAGCTTTGATT 1259 |||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 1488 GCATTTCTTTCTCCAACAAGAAATGGTAACTTTTGTAAGAAGTCACCCAAAGCTTCGATT 1547 Query 1260 TCTCCGACTAGAGTG---AACAAGTCGCAGAAGCTTTCAACAGCTGCAAAGCTCAGGAGG 1316 ||||| ||||| ||| ||||||||||||||||| ||||| ||||||||| |||||||| Sbjct 1548 TCTCCAACTAGGGTGTGCAACAAGTCGCAGAAGCTGTCAACGGCTGCAAAGTTCAGGAGG 1607 Query 1317 TCATTTTCACCATCAAGACTAGCTATGAGGTTGGTCTCTCCAATGAAGAGCAGGAAAAGT 1376 |||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||| || Sbjct 1608 TCATTTTCGCCATCGAGACTAGCTATGAGGTTTGTATCTCCAATGAAGAGCAGGAAA-GT 1666 Query 1377 GTAGTCAAGTGTGATGATCATGAGATGGTGAGTGGATTGAAACAGCGTCCGGTTTTAGTT 1436 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1667 GTAGCCAAGTGCGATGATCATGAGATGGTGAGTGGATTGAAACAGCGTCCGGTTTTGGTT 1726 Query 1437 CCCAAGAGATTCTCGATGGGGAGAATCTAATAAGAGAGAGTTTTCAATGA 1486 || |||||||||||||| ||||||||||||| ||||||||||| ||||| Sbjct 1727 CCTAAGAGATTCTCGATAAGGAGAATCTAATATGAGAGAGTTTTTAATGA 1776 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73292795700 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5