BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928119
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05330.1 | Symbols: ATN, ATTAN | cyclin family | chr3:151888... 2154 0.0
> AT3G05330.1 | Symbols: ATN, ATTAN | cyclin family | chr3:1518882-1521494
REVERSE LENGTH=1950
Length=1950
Score = 2154 bits (1166), Expect = 0.0
Identities = 1388/1490 (93%), Gaps = 36/1490 (2%)
Strand=Plus/Plus
Query 3 AAGATAA-ATATATAGAAGATGGTTGCAAGAACCCCACAAAAGCAGAGGAAAGTGGCGAT 61
|||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 317 AAGAAAATATATATAGAAGATGGTTGCAAGAACCCCACAGAAGCAGAGGAAAGTGGCGAT 376
Query 62 GGTGGTGCCTCCTCTCAACTCAGATCTTCTCAAGGAAACAATCAACAAGGTTGACAAATG 121
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 377 GGTGGTGCCTCCTCTCAACTCAGATCTTCTCAAGGAAACGATCAACAAGGTTGATAAATG 436
Query 122 TATGGAAAGACTGCAAGAGCTACAGTACACAATTGCAGGAGGAACCAAAGTTGTCTCCGG 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 437 TATGGAAAGACTGCAAGAGCTACAGTACACAATTGCAGGAGGAACCAAAGTTGTCTCTGG 496
Query 182 TGTGAACCTTAGCCCTCGAAGTACTAGAACTTACTTGAGGACTAGTCTTAGATGCAAGCA 241
||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||
Sbjct 497 TGTGAACCTTAGCCCTCGAAGCACTAGAATTTACTTGAAGACTAGTCTTAGATGCAAGCA 556
Query 242 AGAAACTTTAAGGATCAAGAGTGCTACTAATAAGAAATCTCCAGTAGGGAAGTTTCCAGC 301
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 557 AGAAACTTTAAGGATCAAGAATGCTACTAATAAGAAATCTCCAGTAGGGAAGTTTCCTGC 616
Query 302 TTCCTCACCAGGAGATTGGAGGAAAATGTCACTCCCAGCAATGCTACTAGGAGAGACTGT 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 TTCCTCACCAGGAGATTGGAGGAAAATGTCACTCCCAGCAATGCTACTAGGAGAGACTGT 676
Query 362 AAATGAAATCTTACAAGCCTCACAGGTCACAAGAGACATTGTAGAAGCCATAGCACCAAA 421
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 677 AAATGAAATCTTACAAGCCTCACAGGTCACAAGAGACATTGTGGACGCCATAGCACCAAA 736
Query 422 GAAGAGTAGAAAGTCCAGGAGATTAACAATGTCACAAGAAGACGATGGCCCTAAAACACC 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 GAAGAGTAGAAAGTCCAGGAGATTAACAATGTCACAAGAAGACGATGGCCCTAAAACACC 796
Query 482 TGAGACAGAACGAAAATCCCGGGAACCGAACCACCCTGAAACTGTCAGTAGCAATATCAA 541
|||||| ||| |||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct 797 CGAGACACAACAAAAATCCCGGGAACAG-A--ATCCTGAAACTGTCAGTAGCAATATCAA 853
Query 542 AGCGAGAAGGAAGAAAGAAAAGCAGAACAGACGTTCAGGATCAGATTCTCCTCCATCTCA 601
||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 854 AGCAAGAAGGAAGAAAGAGAAGCAGAACAGACGATCAGAATCAGATTCTCCTCCATCTCT 913
Query 602 ACAAAGGGCACGCTCAAGAATTGCGTTCAGAACCGTGTCTCCACAGAAAATAGCAGGGAA 661
|||||||||||||||||||||||||||||||||| | ||||||| | || | ||
Sbjct 914 ACAAAGGGCACGCTCAAGAATTGCGTTCAGAACCATCTCTCCAC-----A-AGTA---AA 964
Query 662 GGTTCAGGAAAAGGGAAATGGTGAGAATAGTTTTCGGCATTTGGCTAACAGGGTTTCACC 721
| || ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 965 -G----GG-AAA---TAATGGTGAGAATAGTTTTCGGCATTTGGCCAACAGGGTTTCACC 1015
Query 722 AAAGCACAAACCTTGGGTTAAAAAGGCGGTTCTTTTTCCGAACCCTCTGTTTATTTCTGG 781
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1016 AAAGCACAAACCTTGGGTTAAAAAGGCGGTTCTTTTTCCGAACCCTCTATTTATTTCCGG 1075
Query 782 TACCACTACACAACAAGCCAAGTTCAGTAGAACAATGTCTCCGGTCATAGCCAGAAATGA 841
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TACCGCTACACAACAAGCAAAGTTCAGTAGAACAATGTCTCCGGTCATAGCCAGAAATGA 1135
Query 842 GATATCCAGCATCAAGAACAATAAAGAGACGCCACACAAGTTCTTGATCAAATCTCCTAC 901
||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| |
Sbjct 1136 GATATCCAGCATCAAGAACAATAAAGAAACGCCTTACAAGTTCTTAATCAAATCTCCTCC 1195
Query 902 CACATCAGCATCTAAGTTTCAGGTCAAGATCAGGAGCCCACCTAAGGTCTTGGTTTCTCC 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CACATCAGCATCTAAGTTTCAGGTCAAGATCAGGAGCCCACCTAAGGTCTTGGTTTCTCC 1255
Query 962 TACAAGAAATGGCAGTAACTTGGTTCGGAGGTCACCTAAAGGCTCCAGTTCTCCGACAAG 1021
|||||||||||||||||||| |||||||| |||||||| ||||||||| |||||||||||
Sbjct 1256 TACAAGAAATGGCAGTAACTCGGTTCGGAAGTCACCTAGAGGCTCCAGGTCTCCGACAAG 1315
Query 1022 AAAC-GTTAACATAGGAAAGAAGTCGCCTACCGCGTCGATTTCTCCTATTAGAAACTT-G 1079
|| | |||||| ||||||||||||| | ||||||||||||||||||||||| | |
Sbjct 1316 AA-CTGTTAACTTAGGAAAGAAGTC----A--GCGTCGATTTCTCCTATTAGAAA-TACG 1367
Query 1080 GGAAAGAAGTCTCCAAAGCTATCAACTGCTGCTAAGCTCAGAAGATCATTTACTCCTACG 1139
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 GGAAAGAGGTCTCCAAAGCTATCAACTGCTGCTAAGCTCAGAAGATCATTTACTCCTACG 1427
Query 1140 AGAAATGGCAGTAACTTGGCCCGTAAGTCGTCCATTTCTCCGAAAAGAGTCACGCTTCAA 1199
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 1428 AGAAATGGCAGTAACTTGGCTCGTAAGTCGTCTATTTCTCCGAAAAGAGTCACACTTCAA 1487
Query 1200 GCATTTCTTTCTCCCACAAGAAATGGTAACTTTTGTAAGACGTCACCCAAAGCTTTGATT 1259
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1488 GCATTTCTTTCTCCAACAAGAAATGGTAACTTTTGTAAGAAGTCACCCAAAGCTTCGATT 1547
Query 1260 TCTCCGACTAGAGTG---AACAAGTCGCAGAAGCTTTCAACAGCTGCAAAGCTCAGGAGG 1316
||||| ||||| ||| ||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 1548 TCTCCAACTAGGGTGTGCAACAAGTCGCAGAAGCTGTCAACGGCTGCAAAGTTCAGGAGG 1607
Query 1317 TCATTTTCACCATCAAGACTAGCTATGAGGTTGGTCTCTCCAATGAAGAGCAGGAAAAGT 1376
|||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||| ||
Sbjct 1608 TCATTTTCGCCATCGAGACTAGCTATGAGGTTTGTATCTCCAATGAAGAGCAGGAAA-GT 1666
Query 1377 GTAGTCAAGTGTGATGATCATGAGATGGTGAGTGGATTGAAACAGCGTCCGGTTTTAGTT 1436
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1667 GTAGCCAAGTGCGATGATCATGAGATGGTGAGTGGATTGAAACAGCGTCCGGTTTTGGTT 1726
Query 1437 CCCAAGAGATTCTCGATGGGGAGAATCTAATAAGAGAGAGTTTTCAATGA 1486
|| |||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 1727 CCTAAGAGATTCTCGATAAGGAGAATCTAATATGAGAGAGTTTTTAATGA 1776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73292795700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5