BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928122

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05350.1 | Symbols:  | Metallopeptidase M24 family protein |...   268    3e-71


> AT3G05350.1 | Symbols:  | Metallopeptidase M24 family protein 
| chr3:1526963-1533867 REVERSE LENGTH=2297
Length=2297

 Score =  268 bits (145),  Expect = 3e-71
 Identities = 180/197 (91%), Gaps = 2/197 (1%)
 Strand=Plus/Plus

Query  1     ATTAGTAGCTACAAATCTGCATGTCAAAGATATTTTCAAGGAATTCTGAAAGTGAAGAAA  60
             ||||||| |||||||||||| ||| |||||||  ||| ||||||| |||||| ||||  |
Sbjct  1105  ATTAGTACCTACAAATCTGCCTGTGAAAGATA--TTCGAGGAATTTTGAAAGCGAAGCCA  1162

Query  61    AAGCTAAGACGAAGTTTACTGATAGCTCCAGCGGATATACTGCCAATCCCTCTGGTATTG  120
             ||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct  1163  AAGTTAAGACAAAGTTTACTGATAGCTCCAGCGGATATACTGCCAATCCTTCTGGTATTT  1222

Query  121   ACATGCAATCTCCTATTTCGTGGGCAAAGGCCATTAAAAATGATGCCGAGCTACAGGGAA  180
             |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct  1223  ACATGCAATCTCCTATTTCGTGGGCAAAGGCCATTAAAAATGATGCTGAGCTAAAGGGAA  1282

Query  181   TGAAGAACTCTCACTTG  197
             ||||||| |||||||||
Sbjct  1283  TGAAGAATTCTCACTTG  1299


 Score =  204 bits (110),  Expect = 8e-52
 Identities = 129/137 (94%), Gaps = 5/137 (4%)
 Strand=Plus/Plus

Query  333   GGATATTATGAAGGCCATGCATTTGGGATCCGAATTGAGAATCTCCTTCATGTGAGAGAT  392
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1870  GGATATTATGAAGACCATGCATTTGGGATCCGAATTGAGAATCTCCTTCATGTGAGAGAT  1929

Query  393   GCAGAAACACCAAACCGCTTTGGTGGTGCTACATACCTCCTTGGATTTGAGAAGCTTACA  452
             || |||||||||||||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct  1930  GCTGAAACACCAAACCGCTTTGGTGGTGCTACATACCT--T-GGATTTGAGAAGCTTACA  1986

Query  453   TATTTTTCCCCATTCAG  469
             | | || ||||||||||
Sbjct  1987  T-TCTT-CCCCATTCAG  2001



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25669649117


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5