BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928123
Length=2446
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05330.1 | Symbols: ATN, ATTAN | cyclin family | chr3:151888... 1280 0.0
AT3G05340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1085 0.0
AT3G05345.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 339 1e-91
AT3G05350.1 | Symbols: | Metallopeptidase M24 family protein |... 248 2e-64
> AT3G05330.1 | Symbols: ATN, ATTAN | cyclin family | chr3:1518882-1521494
REVERSE LENGTH=1950
Length=1950
Score = 1280 bits (693), Expect = 0.0
Identities = 820/878 (93%), Gaps = 21/878 (2%)
Strand=Plus/Plus
Query 3 AGAAAAAATATATAGAAGATGGTTGCAAGAACCCCACAAAAGCAGAGGAAAGTGGCGATG 62
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 318 AGAAAATATATATAGAAGATGGTTGCAAGAACCCCACAGAAGCAGAGGAAAGTGGCGATG 377
Query 63 GTGGTGCCTCCTCTCAACTCAGATCTTCTCAAGGAAACAATCAACAAGGTTGACAAATGT 122
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 378 GTGGTGCCTCCTCTCAACTCAGATCTTCTCAAGGAAACGATCAACAAGGTTGATAAATGT 437
Query 123 ATGGAAAGACTGCAAGAGTTACAGTACACAATTGCAGGAGGAACCAAAGTTGTCTCCGGT 182
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 438 ATGGAAAGACTGCAAGAGCTACAGTACACAATTGCAGGAGGAACCAAAGTTGTCTCTGGT 497
Query 183 GTGAACCTTAGCCCTCGAAGTACTAGAACTTACTTGAGGACTAGTCTTAGATGCAAGCAA 242
|||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||
Sbjct 498 GTGAACCTTAGCCCTCGAAGCACTAGAATTTACTTGAAGACTAGTCTTAGATGCAAGCAA 557
Query 243 GAAACTTTAAGGATCAAGAGTGCTACTAATAAGAAATCTCCAGTAGGGAAGTTTCCAGCT 302
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 558 GAAACTTTAAGGATCAAGAATGCTACTAATAAGAAATCTCCAGTAGGGAAGTTTCCTGCT 617
Query 303 TCCTCACCAGGAGATTGGAGGAAAATGTCACTCCCAGCAATGCTACTAGGAGAGACTGTA 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 TCCTCACCAGGAGATTGGAGGAAAATGTCACTCCCAGCAATGCTACTAGGAGAGACTGTA 677
Query 363 AATGAAATCTTACAAGCCTCACAGGTCACCAGAGACATTGTAGAAGCCATAGCACCAAAG 422
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 678 AATGAAATCTTACAAGCCTCACAGGTCACAAGAGACATTGTGGACGCCATAGCACCAAAG 737
Query 423 AAGAGTAGAAAGTCCAGGAGATTAACAATGTCACAAGAAGACGATGGCCCTAAAACACCC 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 AAGAGTAGAAAGTCCAGGAGATTAACAATGTCACAAGAAGACGATGGCCCTAAAACACCC 797
Query 483 GAGACAGAACGAAAATCCCGGGAACCGAACCAACCTGAAACTGTCAGTAGCAATTTCAAA 542
|||||| ||| |||||||||||||| ||| | | ||||||||||||||||||| |||||
Sbjct 798 GAGACACAACAAAAATCCCGGGAACAGAATC--C-TGAAACTGTCAGTAGCAATATCAAA 854
Query 543 GCGAGAAGGAAGAAAGAAAAGCAGAACAGACGATCAGAATCAGATTCTCCTCCATCTCAA 602
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 855 GCAAGAAGGAAGAAAGAGAAGCAGAACAGACGATCAGAATCAGATTCTCCTCCATCTCTA 914
Query 603 CAAAGGGCACGCTCAAAAATTGCGTTCACAACCGTGTCTCCACAGAAAATAGCAGGGAAG 662
|||||||||||||||| ||||||||||| |||| | |||||||| | || | | |
Sbjct 915 CAAAGGGCACGCTCAAGAATTGCGTTCAGAACCATCTCTCCACA-AG--TA--A---A-G 965
Query 663 GTTCAGGGAAAGGGAAATGGTGAGAATAGTTTTCGGCATTTGGCTAACAGGGTTTCACCA 722
| | ||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 966 G----G--AAAT--AA-TGGTGAGAATAGTTTTCGGCATTTGGCCAACAGGGTTTCACCA 1016
Query 723 AAGCACAAACCTTGGGTTCAAAAGGCGGTTCTTTTTCCGAACCCTCTGTTTATTTCCGGC 782
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1017 AAGCACAAACCTTGGGTTAAAAAGGCGGTTCTTTTTCCGAACCCTCTATTTATTTCCGGT 1076
Query 783 ACCGCTACACAACAAGCCAAGTTCAGTAGAACAATGTCTCCGGTCATCGCCAGAAATGAG 842
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1077 ACCGCTACACAACAAGCAAAGTTCAGTAGAACAATGTCTCCGGTCATAGCCAGAAATGAG 1136
Query 843 ATATCCAGCATCAAGAACAGTAAAGAGACGCCTCACAA 880
||||||||||||||||||| |||||| |||||| ||||
Sbjct 1137 ATATCCAGCATCAAGAACAATAAAGAAACGCCTTACAA 1174
> AT3G05340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:1523463-1526166 REVERSE LENGTH=2704
Length=2704
Score = 1085 bits (587), Expect = 0.0
Identities = 661/698 (95%), Gaps = 0/698 (0%)
Strand=Plus/Plus
Query 1212 AGGAACTATGTTTCATGGAACTCGATGATTGCAGCATTTGCTTGCCATGGTCACGGATTA 1271
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1380 AGGAACTATGTTTCATGGAACTCGATGATTGCAGCATTTGCTCGCCATGGTCATGGATTA 1439
Query 1272 GCTGCCTTGAAACTATATGAAGAAATGATTATGCAAGACGTGAAGCCTACAGATGTTACC 1331
||||||||||||||||| |||||||||| || || ||| |||||||||||||||||||||
Sbjct 1440 GCTGCCTTGAAACTATACGAAGAAATGACTACGCTAGAAGTGAAGCCTACAGATGTTACC 1499
Query 1332 TTTCTATCACTACTTCATGCTTGTAGCCATGCAGGGTTAATCGATAAAGGCCGAGAACTC 1391
||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||
Sbjct 1500 TTTCTATCACTACTTCATGCTTGTAGCCATGTAGGGTTGATTGATAAAGGCCGAGAACTC 1559
Query 1392 TTAAACGATATGAAAGATGTCTATGGAATCGAGCCCAGGACAGAGCATTATACCTGTATT 1451
|||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TTAAACGAGATGAAAGAGGTCCATGGAATCGAGCCCAGGACAGAGCATTATACCTGTATT 1619
Query 1452 ATTGACATGTTGGGTCGAGCTGGTCTTATGAAAGAAGCAAAGAGCTTTATAGACTCATTG 1511
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1620 ATTGACATGTTGGGTCGAGCTGGTCTTTTGAAAGAAGCAAAGAGCTTTATAGACTCATTG 1679
Query 1512 CCCGTGAAACCTGACTGTAAAATGTGGCAGGCCTTGCTTGGAGCTTGTAGTTTCCATGGT 1571
|| ||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 1680 CCTTTGAAACCTGACTGTAAAATTTGGCAAGCGTTGCTTGGAGCTTGTAGTTTCCATGGT 1739
Query 1572 GATACAGAAATAGGGAAATATGCAGCTGAACAGTTGCTTCAAACTGCACCTGATAGCTCA 1631
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1740 GATACAGAAGTAGGGGAATATGCAGCTGAACAGTTGTTTCAAACTGCACCTGATAGCTCA 1799
Query 1632 GCTGCTCATATCTTGATGGCTAACATATACTCATCCAGAGAAAAATGGAAGGAAAGGGCG 1691
|||||||||||||||| ||||||||||| |||||||||| |||||||||||| ||||||
Sbjct 1800 TCTGCTCATATCTTGATCGCTAACATATATTCATCCAGAGGAAAATGGAAGGAGAGGGCG 1859
Query 1692 AAGACTATCAAGAGAATGAAAGCAATGGGAGTGACTAAAGGAACAGGCATAAGTTGGATT 1751
||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1860 AAGACGATCAAGAGAATGAAAGCAATGGGAGTGACTAAAGAAACAGGCATAAGTTCGATT 1919
Query 1752 GAAATTGAGCATAAAACACACTGCTTTGTGGTTGAGGACAAAATGCATCCACAAGAAGAG 1811
||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||
Sbjct 1920 GAAATTGAGCATAAAACACACAGCTTTGTGGTTGAGGACAAATTGCATCCACAAGCAGAG 1979
Query 1812 GCTATATATGATGTTCTGTCTGAATTGTTTCCCGTTATGGTAGATGAAGGTTACAGACCT 1871
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1980 GCTATATATGATGTTCTGTCTGGATTGTTTCCGGTTATGGTAGATGAAGGTTACAGACCT 2039
Query 1872 GATAAGAGGTTTATTCTCTGTTATACAGGAGATGGCAG 1909
||||||||||||||||| |||||||||||||||| |||
Sbjct 2040 GATAAGAGGTTTATTCTGTGTTATACAGGAGATGACAG 2077
Score = 414 bits (224), Expect = 2e-114
Identities = 251/263 (95%), Gaps = 5/263 (2%)
Strand=Plus/Plus
Query 954 GAATTGTGCATTGAGAGTGCGCTAATGGATATGTACTCTAAATGTGGAAGCATTGAAGAT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 GAATTGTGCATTGAGAGTGCGCTAATGGATATGTACTCTAAATGTGGAAGCATTGAAGAT 1046
Query 1014 GCGTGGAAGATTTTCGAGTCCACCGAAG-AAGTTGATGAAGTTTCGATGACAT-TGATAT 1071
||||||| ||||||||||||||| || | |||||||||||||||| ||||| | ||||||
Sbjct 1047 GCGTGGACGATTTTCGAGTCCAC-GACGGAAGTTGATGAAGTTTCCATGAC-TGTGATAT 1104
Query 1072 TAGTTGGTTTAGCACAAAATGGGTCAGAGGAAGAAGCTATACAGTTCTTCATTAGAATGC 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 TAGTTGGTTTAGCACAAAATGGGTCAGAGGAAGAAGCTATACAGTTCTTCATTAGAATGC 1164
Query 1132 TTCAAGCTGGTGTAGAGATTGATGCAAATGTAGTTTCAGCTGTTCTTGGAGTTTCGTTTG 1191
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1165 TTCAAGCTGGAGTAGAGATTGATGCAAATGTAGTCTCAGCTGTTCTTGGAGTTTCGTTTA 1224
Query 1192 TCGATAAACTCTTTGGGTCTAGG 1214
||||||| ||||||||||||||
Sbjct 1225 TCGATAAT-TCTTTGGGTCTAGG 1246
Score = 394 bits (213), Expect = 2e-108
Identities = 248/264 (94%), Gaps = 5/264 (2%)
Strand=Plus/Plus
Query 1914 GGGAGAGAGAAGGTAAGAGATTCAGCAAAGGAATGTCTTCGTGTATTTGCTTCCGTACCT 1973
|||| ||||||||||||||| | | ||| |||||||||||||||||||||||| ||||||
Sbjct 2296 GGGAAAGAGAAGGTAAGAGA-T-A-CAATGGAATGTCTTCGTGTATTTGCTTCGGTACCT 2352
Query 1974 AAAATCTCTTTCTTCTCCAGTTCAAGATACTCAACTACTCAACGATTCATCCCCAGTTGC 2033
||||||||||||||||||| |||||||||||||||| |||| |||||||| |||||||||
Sbjct 2353 AAAATCTCTTTCTTCTCCAATTCAAGATACTCAACTTCTCAGCGATTCATTCCCAGTTGC 2412
Query 2034 AGA-GAGAAAAGCAGAGAGGATCCACTCTCCAGCTCTTCACCGTACTCTATACTTGGCGT 2092
||| || |||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2413 AGAGGA-AAAAACAGAGAGGATCCTCTCTCCAGCTCTTCACCGTACTCTATACTTGGCGT 2471
Query 2093 AGAGCCAAGCTGCTCATCTTCCGAGCTAAAGGCGGCTTTTCGTGCCAAAGTATGCATCCA 2152
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2472 AGAGCCAAGCTGCTCATCTTCCGAGCTAAAGGCAGCTTTTCGTGCCAAAGTATGCATCCA 2531
Query 2153 AGAATCACTAATCTGTACTGTTCT 2176
||||||||||||||||||| ||||
Sbjct 2532 AGAATCACTAATCTGTACTTTTCT 2555
> AT3G05345.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr3:1522449-1523889 REVERSE LENGTH=777
Length=777
Score = 339 bits (183), Expect = 1e-91
Identities = 216/231 (94%), Gaps = 5/231 (2%)
Strand=Plus/Plus
Query 1914 GGGAGAGAGAAGGTAAGAGATTCAGCAAAGGAATGTCTTCGTGTATTTGCTTCCGTACCT 1973
|||| ||||||||||||||| | | ||| |||||||||||||||||||||||| ||||||
Sbjct 19 GGGAAAGAGAAGGTAAGAGA-T-A-CAATGGAATGTCTTCGTGTATTTGCTTCGGTACCT 75
Query 1974 AAAATCTCTTTCTTCTCCAGTTCAAGATACTCAACTACTCAACGATTCATCCCCAGTTGC 2033
||||||||||||||||||| |||||||||||||||| |||| |||||||| |||||||||
Sbjct 76 AAAATCTCTTTCTTCTCCAATTCAAGATACTCAACTTCTCAGCGATTCATTCCCAGTTGC 135
Query 2034 AGA-GAGAAAAGCAGAGAGGATCCACTCTCCAGCTCTTCACCGTACTCTATACTTGGCGT 2092
||| || |||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 136 AGAGGA-AAAAACAGAGAGGATCCTCTCTCCAGCTCTTCACCGTACTCTATACTTGGCGT 194
Query 2093 AGAGCCAAGCTGCTCATCTTCCGAGCTAAAGGCGGCTTTTCGTGCCAAAGT 2143
||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 195 AGAGCCAAGCTGCTCATCTTCCGAGCTAAAGGCAGCTTTTCGTGCCAAAGT 245
> AT3G05350.1 | Symbols: | Metallopeptidase M24 family protein
| chr3:1526963-1533867 REVERSE LENGTH=2297
Length=2297
Score = 248 bits (134), Expect = 2e-64
Identities = 206/239 (86%), Gaps = 11/239 (5%)
Strand=Plus/Plus
Query 2175 CTGATGTTTTGGCTCCTGGTGGAAGAGTTGGTATTGACCCTGGAGCAGTTCCTTTTTTCC 2234
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 557 CTGATGTTTTGGCGCCTGGTGGAAGAGTTGGTATTGACCCT-------TTCCTTTTTTCC 609
Query 2235 GCCGATGCTGCTGAGGAATTGAAGGAGGTTATAGCGAAGAAGAATCATGAGTTGGTTTAC 2294
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 610 GCCGATGCTGCTGAGGAATTGAAGGAGGTTATAGCAAAGAAGAATCATGAGTTGGTTTAC 669
Query 2295 TTGTGTCCTTCCATATCTCATCCACAAGATTTACATTGTAC--AAGGCCAAAGCCTCCAA 2352
|||| | | | |||| | | |||| | | | || |||||||||||||||||
Sbjct 670 TTGTA-CAATGTAAATCTTGTGGATGAGATATGGAAGG-ACTCAAGGCCAAAGCCTCCAA 727
Query 2353 GCAAACGAATAAGGATACATGACTTGAAGTATGCTGGTTTAGATGTGGCCTCAAAATTG 2411
||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 728 GCAGACAAATAAGGATACATGACTTGAAGTATGCTGGTTTAGATGTGGCCTCGAAATTG 786
Score = 78.7 bits (42), Expect = 3e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Minus
Query 2294 CTTGTGTCCTTCCATATCTCATCCACAAGATTTACATTGTACAAG 2338
|||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CTTGAGTCCTTCCATATCTCATCCACAAGATTTACATTGTACAAG 669
Score = 60.2 bits (32), Expect = 9e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 2412 CATCTCCCATTGTAATATCCATGCTTGATGAGATT 2446
||||| |||||||||||||||||||||||||||||
Sbjct 821 CATCTGCCATTGTAATATCCATGCTTGATGAGATT 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121485318900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5