BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928139

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05450.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Cystatin-...   147    7e-35


> AT3G05450.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Cystatin-related, 
plant (InterPro:IPR006525); BEST Arabidopsis thaliana 
protein match is: Cystatin/monellin superfamily protein 
(TAIR:AT3G05685.1); Has 2098 Blast hits to 1525 proteins in 
202 species: Archae - 2; Bacteria - 561; Metazoa - 485; Fungi 
- 302; Plants - 191; Viruses - 20; Other Eukaryotes - 537 
(source: NCBI BLink). | chr3:1573909-1576418 REVERSE LENGTH=1323
Length=1323

 Score =  147 bits (79),  Expect = 7e-35
 Identities = 100/110 (91%), Gaps = 2/110 (2%)
 Strand=Plus/Plus

Query  117  CATTTGCTGCAAGAGAGTTTGAGTT-TCCAGATGCACCTTTAGTGGAGTATCAAGCTAAG  175
            |||||||||||||||||| ||| || |||||||||||||| || ||||||||||||||||
Sbjct  491  CATTTGCTGCAAGAGAGTCTGA-TTCTCCAGATGCACCTTCAGAGGAGTATCAAGCTAAG  549

Query  176  GCCGCATGGTCTGTAACCAACAAGACTTATCCCATGTTTTGTAGACCAAG  225
            ||||||||||||| | || | |||||||||||||| ||||||||||||||
Sbjct  550  GCCGCATGGTCTGCAGCCGAGAAGACTTATCCCATCTTTTGTAGACCAAG  599



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12566937250


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5