BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928150
Length=1367
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05530.1 | Symbols: RPT5A, ATS6A.2 | regulatory particle tri... 2263 0.0
> AT3G05530.1 | Symbols: RPT5A, ATS6A.2 | regulatory particle triple-A
ATPase 5A | chr3:1603400-1606231 FORWARD LENGTH=1653
Length=1653
Score = 2263 bits (1225), Expect = 0.0
Identities = 1321/1368 (97%), Gaps = 3/1368 (0%)
Strand=Plus/Plus
Query 1 CTTTGAGAAACCCCTAACTC-TTGCTCCTCTCTTCCTGGCGATCTCTCTCTCCGATTTGG 59
|||||||||| ||||||||| |||||| |||||||| |||||||| ||||||||||||||
Sbjct 73 CTTTGAGAAATCCCTAACTCTTTGCTCTTCTCTTCCCGGCGATCTATCTCTCCGATTTGG 132
Query 60 GTATTGAAATGGCAACTCCTATGGTTGAAGATACGTCAAGCTTCGAAGAGGATCAGCTCG 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 133 GTATTGAAATGGCAACTCCTATGGTTGAAGATACGTCAAGCTTCGAAGAGGATCAGCTTG 192
Query 120 CTTCCATGTCCACCGAAGATATCACTAGAGCTACTCGTCTCCTCGATAACGAGATTCGAA 179
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 193 CTTCCATGTCCACCGAAGATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAA 252
Query 180 TTCTCAAGGAAGACGCACAGAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATAA 239
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 253 TTCTCAAGGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTA 312
Query 240 AGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 AGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTG 372
Query 300 TGGAGATTTTGGAGATGAATCCTGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATC 359
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 373 TCGAGATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATC 432
Query 360 TTGACTCTCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGACCATCT 419
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGACCATCT 492
Query 420 TTCTACCAGTGGTTGGACTCGTGGATCCTGATAGTTTGAAACCTGGTGACTTGGTTGGAG 479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 TTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCTGGTGACTTGGTTGGAG 552
Query 480 TTAATAAAGATAGCTACTTGATTTTGGATACCTTGCCATCCGAGTATGACTCTAGGGTTA 539
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 TTAACAAAGATAGCTACTTGATTTTGGATACCTTGCCATCCGAGTATGACTCTAGGGTTA 612
Query 540 AAGCCATGGAGGTCGATGAAAAACCAACTGAAGATTACAATGACATCGGAGGACTAGAGA 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 613 AAGCCATGGAGGTCGATGAAAAACCAACTGAAGATTACAATGACATTGGAGGACTAGAGA 672
Query 600 AGCAGATCCAAGAGCTTGTTGAGGCAATTGTGCTTCCAATGACACACAAGGAACGTTTTG 659
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 673 AGCAGATCCAAGAGCTTGTAGAGGCAATTGTGCTTCCCATGACGCACAAGGAACGTTTTG 732
Query 660 AGAAGCTGGGTGTTCGTCCACCAAAGGGGGTGCTCTTATATGGTCCTCCAGGGACTGGTA 719
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 733 AGAAGCTGGGTGTTCGTCCACCAAAGGGAGTGCTCTTGTATGGTCCCCCAGGGACTGGTA 792
Query 720 AAACTTTGATGGCTCGTGCCTGCGCAGCACAGACCAATGCCACCTTCCTTAAATTGGCAG 779
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 AAACTTTAATGGCTCGTGCCTGCGCAGCACAGACCAATGCCACCTTCCTTAAATTGGCAG 852
Query 780 GCCCTCAATTGGTCCAGATGTTCATTGGAGACGGAGCAAAGCTTGTCCGCGATGCCTTTC 839
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 853 GCCCTCAATTGGTCCAGATGTTCATTGGAGACGGAGCAAAGCTTGTCCGTGATGCCTTTC 912
Query 840 AACTTGCCAAAGAGAAAGCTCCGTGCATTATCTTCATAGATGAAATCGATGCCATCGGTA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 913 AACTTGCCAAAGAGAAAGCTCCGTGCATTATCTTCATAGATGAAATCGATGCCATTGGTA 972
Query 900 CAAAGCGTTTCGACAGTGAAGTCAGCGGAGACAGGGAGGTGCAGAGAACTATGTTGGAGT 959
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 973 CAAAGCGTTTCGACAGTGAAGTCAGCGGAGACAGGGAAGTGCAGAGGACTATGTTGGAGT 1032
Query 960 TGCTCAATCAACTTGATGGATTCAGCAGCGATGAACGTATTAAGGTGATTGCAGCCACTA 1019
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1033 TGCTCAATCAACTTGACGGATTCAGTAGCGATGAACGTATTAAGGTGATTGCAGCTACTA 1092
Query 1020 ACCGTGCAGATATTCTAGATCCAGCACTCATGCGTTCTGGTAGACTAGACAGAAAGATTG 1079
|||||||||||||||| || ||||||||||||||||||||| || |||||||||||||||
Sbjct 1093 ACCGTGCAGATATTCTGGACCCAGCACTCATGCGTTCTGGTCGATTAGACAGAAAGATTG 1152
Query 1080 AGTTCCCGCACCCAACTGAAGAAGCCAGAGCCAGAATCTTGCAGATTCACTCAAGGAAGA 1139
||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1153 AGTTCCCACACCCAACCGAAGAAGCGAGAGCAAGAATCTTGCAGATTCACTCAAGGAAGA 1212
Query 1140 TGAATGTCCACCCAGACGTCAACTTTGAGGAGCTTGCAAGATCAACAGATGATTTCAATG 1199
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1213 TGAATGTCCACCCAGACGTCAACTTTGAGGAGCTTGCACGATCAACAGATGATTTCAATG 1272
Query 1200 GAGCTCAGCTGAAAGCAGTGTGTGTAGAGGCAGGCATGCTAGCGCTTCGCCGTGATGCCA 1259
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1273 GAGCTCAGCTGAAAGCAGTGTGTGTAGAGGCAGGCATGTTAGCTCTTCGCCGTGATGCCA 1332
Query 1260 CAGAGGTGAACCATGAAGACTTCAATGAAGGTATCATCCAAGTCCAGGCCAAGAAGAAAG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CAGAGGTGAACCATGAAGACTTCAATGAAGGTATCATCCAAGTCCAGGCCAAGAAGAAAG 1392
Query 1320 CAAGCTTGAACTACTATGCCTGATC-C-CTCTGTCATCATTTATATTT 1365
|||||||||||||||| |||||||| | |||| ||||||||||| |||
Sbjct 1393 CAAGCTTGAACTACTACGCCTGATCTCTCTCTCTCATCATTTATTTTT 1440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67318930845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5