BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928154
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05560.1 | Symbols: | Ribosomal L22e protein family | chr3:... 704 0.0
AT5G27770.1 | Symbols: | Ribosomal L22e protein family | chr5:... 460 4e-129
> AT3G05560.1 | Symbols: | Ribosomal L22e protein family | chr3:1614178-1615506
FORWARD LENGTH=783
Length=783
Score = 704 bits (381), Expect = 0.0
Identities = 415/432 (96%), Gaps = 0/432 (0%)
Strand=Plus/Plus
Query 4 AGAGAAGGCTTGGAAAAATGAGTCGAGGAAGTGCAGCTGTTGCCAAGGGAAAGAAGAAGG 63
||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 90 AGAGAAGTCTTGGGAAAATGAGTCGTGGAGGTGCAGCTGTTGCCAAGGGAAAGAAGAAGG 149
Query 64 GAGTTTCCTTCACCATTGATTGTTCGAAGCCTGTTGATGACAAGATCATGGAGATTGCTT 123
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 150 GAGTTTCCTTCACCATTGATTGTTCAAAGCCTGTCGATGACAAGATCATGGAGATTGCTT 209
Query 124 CCCTTGAGAAGTTTCTTCAGGAGAGGATCAAGGTCGGTGGCAAAGCTGGTGCACTCGGTG 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 210 CCCTTGAGAAGTTTCTTCAGGAGAGGATCAAGGTCGGTGGCAAAGCTGGTGCACTTGGTG 269
Query 184 ATTCTGTCACAATCACCCGTGAGAAGAGCAAGATCACTGTTACTTCAGATGGCCAATTCT 243
|||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 270 ATTCTGTCACAATCACACGTGAGAAGAGCAAGATCACTGTCACTGCAGATGGCCAATTCT 329
Query 244 CCAAGAGGTATTTGAAGTACTTGACAAAGAAGTACCTCAAGAAGCACAATGTGAGGGATT 303
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 330 CCAAGAGGTATTTGAAGTACTTGACAAAGAAGTACCTGAAGAAGCACAATGTAAGGGATT 389
Query 304 GGCTTAGAGTGATTGCAGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACA 363
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 GGCTCAGAGTGATTGCAGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACA 449
Query 364 TTGCTGAGAACGAGGGAGAGGAGGAAGACTAAACCTCAGAAACCAGTTTGGTTTAGAACT 423
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 450 TTGCTGAGAACGAAGGAGAGGAGGAAGACTAAACCTCAGAATCCAGTTTGGTTTAGAAGT 509
Query 424 ATGCTCTATTCC 435
|| |||||||||
Sbjct 510 ATACTCTATTCC 521
> AT5G27770.1 | Symbols: | Ribosomal L22e protein family | chr5:9835885-9837341
FORWARD LENGTH=700
Length=700
Score = 460 bits (249), Expect = 4e-129
Identities = 340/384 (89%), Gaps = 6/384 (2%)
Strand=Plus/Plus
Query 16 GAAAAATGAGTCGAGG-AAGTGCAGCTGTTGCCAAGGGAAAGAAGAAGGGAGTTTCCTTC 74
||||||||||||| || || ||||| | || |||||||||||||||||||||||||||
Sbjct 93 GAAAAATGAGTCGTGGTAA-CGCAGCAGCAGCTAAGGGAAAGAAGAAGGGAGTTTCCTTC 151
Query 75 ACCATTGATTGTTCGAAGCCTGTTGATGACAAGATCATGGAGATTGCTTCCCTT-GAGAA 133
|| || |||||||| || ||||| ||||| ||||| ||||||||||||| | || |||||
Sbjct 152 ACTATCGATTGTTCTAAACCTGTGGATGATAAGATTATGGAGATTGCTT-CTTTAGAGAA 210
Query 134 GTTTCTTCAGGAGAGGATCAAGGTCGGTGGCAAAGCTGGTGCACTCGGTGATTCTGTCAC 193
|||||||||||||||||| ||||| ||||| ||||||||||| || ||||||||||| |
Sbjct 211 GTTTCTTCAGGAGAGGATTAAGGTTGGTGGTAAAGCTGGTGCTCTTGGTGATTCTGTTTC 270
Query 194 AATCACCCGTGAGAAGAGCAAGATCACTGTTACTTCAGATGGCCAATTCTCCAAGAGGTA 253
||||| ||||||||||||||||||||||| ||| | ||||| |||||||||||||||||
Sbjct 271 TATCACTCGTGAGAAGAGCAAGATCACTGTCACTGCTGATGGTCAATTCTCCAAGAGGTA 330
Query 254 T-TTGAAGTACTTGACAAAGAAGTACCTCAAGAAGCACAATGTGAGGGATTGGCTTAGAG 312
| || ||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 331 TCTT-AAGTACTTGACAAAGAAGTACTTGAAGAAGCACAACGTGAGGGATTGGCTTAGAG 389
Query 313 TGATTGCAGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCTGAGA 372
||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 390 TGATTGCGGCGAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCCGAGA 449
Query 373 ACGAGGGAGAGGAGGAAGACTAAA 396
|||| | ||||| ||||| ||||
Sbjct 450 ACGAAGCTGAGGAAGAAGATTAAA 473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20660044839
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5