BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928155

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05570.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   363    6e-100


> AT3G05570.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G39235.1); 
Has 73 Blast hits to 73 proteins in 11 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1616102-1617339 
REVERSE LENGTH=502
Length=502

 Score =  363 bits (196),  Expect = 6e-100
 Identities = 246/270 (91%), Gaps = 4/270 (1%)
 Strand=Plus/Plus

Query  1    GAAACCCCGCCAAAACCAGCCATGTCTTCATGTCGAAAGAAGACAAAGGATGATGCCAAT  60
            |||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct  91   GAAAACCCGCCAAAACCGGCCACGTCTTCATGTCGAAAGAAGACAAAGGATGATGCCAAT  150

Query  61   TTCCTTGAAGACGTCAAGGATCACATTGATGAATTCATGAGTGCTTCCATGGATGATCAC  120
            ||||| |||||||||||||||||||| ||||| ||||| | |||||||||||||||||||
Sbjct  151  TTCCTAGAAGACGTCAAGGATCACATCGATGATTTCATTAATGCTTCCATGGATGATCAC  210

Query  121  AAGAATTGTTTCAACAAGACCATAAAAAAGATGTTTGGATTATCAAAGGCTGTTGCGGAG  180
            ||||| ||||||||||| ||||| || ||||||||||| || ||||||||||||||||| 
Sbjct  211  AAGAACTGTTTCAACAAAACCATCAAGAAGATGTTTGGGTTGTCAAAGGCTGTTGCGGAT  270

Query  181  AAGCAGCAAACTGAGGCTAAAGGAG---TCGAGAGTTATTTGCCACTTCAGACAACAGTC  237
            |||||||||| ||||||||||||||   |||||||||||||||| |||||||||||||||
Sbjct  271  AAGCAGCAAAGTGAGGCTAAAGGAGGAGTCGAGAGTTATTTGCCTCTTCAGACAACAGTC  330

Query  238  TCGGACTAGAGAAACTGAT-AGAGAATCAA  266
            || || ||||||||||||| | ||||||||
Sbjct  331  TCAGATTAGAGAAACTGATGATAGAATCAA  360



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12164795258


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5