BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928170

Length=712
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05685.1 | Symbols:  | Cystatin/monellin superfamily protein...   394    6e-109


> AT3G05685.1 | Symbols:  | Cystatin/monellin superfamily protein 
| chr3:1673780-1674908 REVERSE LENGTH=543
Length=543

 Score =  394 bits (213),  Expect = 6e-109
 Identities = 260/283 (92%), Gaps = 2/283 (1%)
 Strand=Plus/Plus

Query  155  CGATGATTACGTTGACCCTGACGATGAGCTCTTACATCCGACGTGGTTTAAAGTCCCTGA  214
            ||| || |||||||||||| |||| |||||   |||||||||||||||||||||||||||
Sbjct  51   CGAAGAGTACGTTGACCCTAACGAGGAGCTAAAACATCCGACGTGGTTTAAAGTCCCTGA  110

Query  215  ATGGGATGTGGACAGCTTCGGTGGTCTCGAGTACGATTCCTCTGAATATAAAAATGAATT  274
            ||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||
Sbjct  111  ATGGGATGTGGACAGCTTCGAAGGTCTCGAGTACAATTCCTCTGAATATAAAAATGAATT  170

Query  275  CCCCAAGGAAGAACATGAAAAACTATGGCGTCGCTTTAAGCGCCAGCTCATCGAGAACAA  334
            | | || || ||| ||||||| | |||||| |||||||||||||||||||||||||| ||
Sbjct  171  CTCTAATGACGAAGATGAAAATCAATGGCGCCGCTTTAAGCGCCAGCTCATCGAGAATAA  230

Query  335  GGGGTTTTATGTGGAGCCAGAGCTTTGGCCAAT-GTACAACTACTCAGATTACAAAGTAG  393
            ||||||||||||||||| |||||||||||| || |||||||||||| |||||||||||||
Sbjct  231  GGGGTTTTATGTGGAGCGAGAGCTTTGGCC-ATGGTACAACTACTCGGATTACAAAGTAG  289

Query  394  TCCCTAATTTGGATTTGCCTGCCAGTTTCGGGCAAACCTACCG  436
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct  290  TCCCTAATTTGGATTTGCCTGCCAGTTTCGGGCAAACCTACCG  332


 Score =  206 bits (111),  Expect = 3e-52
 Identities = 157/179 (88%), Gaps = 3/179 (2%)
 Strand=Plus/Plus

Query  495  TCGAATGTAGAGTTTGTGGAAGTGGTGAGAGGTATATTTACAGCCGGATCTAAA-TCAAA  553
            ||| |||| |||||||||||||||||| ||||||||||| |||| ||||| ||  |||||
Sbjct  338  TCG-ATGTGGAGTTTGTGGAAGTGGTGCGAGGTATATTTTCAGCAGGATC-AAGGTCAAA  395

Query  554  GTCGTACATTACATTTATGGCTAGGGAGAAACCTGATGGACCTCTTGTCGAGTATCAAGC  613
            ||||| ||| ||||| |||||||||||||||||||||||||||| ||| |||||||||||
Sbjct  396  GTCGTTCATCACATTCATGGCTAGGGAGAAACCTGATGGACCTCCTGTTGAGTATCAAGC  455

Query  614  TAAAGTGTGGTGTACTGTAATTAGACACGAGAACTATCCCATTCTCTGTAGACGGGCTC  672
            ||| || |||||||| ||  || || || ||||||||||||| ||||||||||||||||
Sbjct  456  TAAGGTTTGGTGTACGGTTGTTCGAAACCAGAACTATCCCATCCTCTGTAGACGGGCTC  514



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34510858989


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5