BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928185
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05760.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 1070 0.0
> AT3G05760.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr3:1707900-1710038 FORWARD LENGTH=818
Length=818
Score = 1070 bits (579), Expect = 0.0
Identities = 612/628 (97%), Gaps = 1/628 (0%)
Strand=Plus/Plus
Query 11 TTGTTCTTCAATGGCTTCGAGCAACACGACAACTGGGGTTGATAATACGTTTAGAAAGAA 70
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 72 TTGTTCTTCAATGGCTTCGAGCAACACGACTACTGGGGTTGATAATACGTTTAGAAAGAA 131
Query 71 GTTCGATGAGGAAGAGTTTAAGGAGCGTGCTCGTGAACGCGAAAAGAAGGAATCGGATCG 130
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 GTTTGATGTGGAAGAGTTTAAGGAGCGTGCTCGTGAACGCGAAAAGAAGGAATCGGATCG 191
Query 131 TTCTAAGTCTCGGTCCAAAGGTCCTCCTGTGCAAAGAGCCCCTTTGAAGCATAGAGATTA 190
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 GTCTAAATCTCGGTCCAAAGGTCCTCCTGTGCAAAGAGCCCCTTTGAAGCATAGAGATTA 251
Query 191 TCATGTAGACCTAGAATCTCGTCTGGGCAAGACCCAGGTCGTTACACCGGTAGCTCCTCT 250
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 252 TCATGTAGACCTAGAATCTCGTCTGGGCAAGACACAGGTCGTTACACCGGTAGCGCCTCT 311
Query 251 AAGTCAGCAGGCCGGTTATTTCTGTCGCGTCTGTGATTGTGTTGTTAAAGATTCGGCAAA 310
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 312 AAGTCAGCAGGCTGGTTATTTCTGTCGCGTTTGTGATTGTGTTGTTAAAGATTCGGCAAA 371
Query 311 CTACTTGGATCACATAAATGGGAAAAAACATCAAAGGGCATTGGGGATGTCTATGCGGGT 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 CTACTTGGATCACATAAATGGGAAAAAACATCAAAGGGCATTGGGGATGTCTATGCGGGT 431
Query 371 GGAGAGATCGTCACTTGAACAAGTCCAAGAGCGGTTCGAGGTTTTAAAGAAGCGGAAAAC 430
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 432 GGAGAGATCGTCACTTGAACAAGTCCAAGAGCGGTTCGAGGTTTTAAAGAAGCGGAAAGC 491
Query 431 ACCAGGAACTTTCACAGAACAAGATCTGGACGAACGCATCCGgaaacagcaagaagaaga 490
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 492 GCCAGGAACTTTCACAGAACAAGATCTGGACGAACGCATCCGAAAACAGCAAGAAGAAGA 551
Query 491 ggaagaactaaaaaggcagcgtagagagaaaaagaaggagaagaagaaagggaaggtgat 550
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 552 GGAAGAACTAAAAAGGCAGCGTAGAGAGAAAAAGAAAGAGAAGAAGAAAGGGAAGGTGGT 611
Query 551 ggaagaagagCCTGAGATGGATCCTGAAGTTGCAGAGATGATGGGATTTGGGGGCTTTGG 610
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 612 GGAAGAAGAGCCTGAGATGGATCCTGAGGTTGCAGAGATGATGGGATTTGGGGGCTTTGG 671
Query 611 ATCTTCaaaaaaaTCATGAT-ATTATAT 637
|||||||||||||||||||| |||||||
Sbjct 672 ATCTTCAAAAAAATCATGATGATTATAT 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31346107728
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5