BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928191
Length=1942
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05820.1 | Symbols: INVH, At-A/N-InvH | invertase H | chr3:1... 3107 0.0
> AT3G05820.1 | Symbols: INVH, At-A/N-InvH | invertase H | chr3:1732991-1735757
REVERSE LENGTH=2108
Length=2108
Score = 3107 bits (1682), Expect = 0.0
Identities = 1845/1926 (96%), Gaps = 2/1926 (0%)
Strand=Plus/Plus
Query 2 TAGGTGTTGTATCCTGATTATGAATGCCATCACTTTTCTTGGAAATTCAACGATGATACC 61
||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TAGGTCTTGGACCCTGATTATGAATGCCATCACTTTTCTTGGAAATTCAACGATGATACC 119
Query 62 TTCACATTGCATTCTCCGAGCGTTTTCGAGAATCTCTCCATCTAAATACATCCGAGACAC 121
|||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 120 TTCACAATGTATTCTCCGAGCGTTTACAAGAATCTCTCCATCTAAATACATCCGAGACAC 179
Query 122 CGCGTTTCGATCCTATCCTTCTCGGTTCTCAAGCTGCAACAACCAATACAGGAATGCAGA 181
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 180 CTCGTTTCGATCCTATCCTTCTCGGTTCTCAAGCTGCATCAACCAATACAGGAATGCAGA 239
Query 182 TTCAGATAGAATCATCAAACTGAGAAATGTTGTGCCATTTTGTACCGACAGGCAAAGCTC 241
||||||||||||||||| || || ||||| |||||||||||||||||||||||| |||||
Sbjct 240 TTCAGATAGAATCATCAGACCGACAAATGCTGTGCCATTTTGTACCGACAGGCAGAGCTC 299
Query 242 TGTTACAGCTCAGGTTGTTTCTGAGGCAAGAAGTCTCTCTGCATCGACGACCTGCGCAAA 301
||||||||||||||||||||||||||||||||||| |||||| || || || ||||||||
Sbjct 300 TGTTACAGCTCAGGTTGTTTCTGAGGCAAGAAGTCACTCTGCTTCCACCACATGCGCAAA 359
Query 302 TGACACGACCTTGGATCAAATATACACGAAGAACGGTTTAAATGTGAAACCTTTAGTTGT 361
|||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||
Sbjct 360 TGACACGACCTTGGATCAGATTTACACCAAGAACGGCTTAAATGTGAAACCTTTAGTTGT 419
Query 362 CGAGAGGTTAAAAGGACACGAGAAAGATGAAGAGGTGGTCAATGGAGATGACA-AAAGCG 420
||||||||||||| || | |||||||||||||||| |||||||| |||||| | || |||
Sbjct 420 CGAGAGGTTAAAAAGAGATGAGAAAGATGAAGAGGCGGTCAATGAAGATGA-AGAAGGCG 478
Query 421 TAAACAGAGATGGTTTCGAGGGTGTTAAGAGTAATGACTTAGAGGAAGAGGCATGGAGAT 480
|||| |||||||||||||||||||||||| |||||||| | |||||||||||||||||||
Sbjct 479 TAAAGAGAGATGGTTTCGAGGGTGTTAAGTGTAATGACGTCGAGGAAGAGGCATGGAGAT 538
Query 481 TGCTGAGGGATTCAGTAGTGACATACTGCGATTCGCCTGTAGGAACGGTGGCTGCTAAAG 540
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 539 TGCTGAGGGATTCAATAGTGACATACTGCGATTCTCCTGTAGGAACGGTGGCTGCTAAAG 598
Query 541 ATCCAACTGACACAATGCCATCAAACTACGATCAGGTCTTTATTAGGGATTTTGTACCTT 600
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATCCAACTGATACAACGCCATCAAACTACGATCAGGTCTTTATTAGGGATTTTGTACCTT 658
Query 601 CAGCTCTGGCTTTTCTGCTGAAGGGAGAAAGCGAAATTGTTCGAAACTTCCTTCTTCACA 660
| ||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 659 CGGCTTTGGCTTTTCTCCTGAAGGGAGAAAGCGAAATTGTTCGAAACTTCCTTCTCCACA 718
Query 661 CGCTGCAGTTGCAGAGTTGGGAGAAAACAGTTGATTGTTATAGTCCAGGACAAGGGTTAA 720
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CGTTGCAGTTGCAGAGTTGGGAGAAAACAGTTGATTGTTATAGTCCAGGACAAGGGTTAA 778
Query 721 TGCCTGCGAGTTTCAAAGTCAGAACTTTACCGCTTGAAGAGGACAAGTTCGAAGAGGTTC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TGCCTGCGAGTTTCAAAGTCAGAACTTTACCGCTTGAAGAGGACAAGTTCGAAGAGGTTC 838
Query 781 TGGATCCAGATTTTGGCGAAGCAGCTATAGGTCGTGTTGCTCCCGTTGATTCTGGTTTAT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGGATCCAGATTTTGGCGAAGCAGCTATAGGTCGTGTTGCTCCCGTTGATTCTGGTTTAT 898
Query 841 GGTGGATAATATTGTTGAGGGCATACGGGAAAATCACAGGGGATTACTCGCTTCAAGAGA 900
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 899 GGTGGATAATCTTGTTGAGGGCATACGGGAAAATCACAGGAGATTACTCGCTTCAAGAGA 958
Query 901 GGATAGATGTTCAAACAGGGATAAAGATGATTGCAAACCTGTGTTTAGCAGATGGGTTTG 960
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GGATAGATGTGCAGACAGGGATAAAGATGATTGCAAACCTGTGTTTAGCAGATGGGTTTG 1018
Query 961 ATATGTTTCCCACACTGTTGGTCACTGATGGCTCTTGTATGATAGATCGACGTATGGGTA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATATGTTTCCCACACTGTTGGTCACTGATGGCTCTTGTATGATAGATCGACGTATGGGTA 1078
Query 1021 TCCACGGCCACCCTCTTGAGATCCAAGCTTTGTTCTATTCCGCTCTGCGGTCTTCTCGTG 1080
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1079 TCCACGGTCACCCTCTTGAGATCCAAGCTTTGTTCTATTCCGCTCTACGGTCTTCTCGTG 1138
Query 1081 AGATGATAACTGTAAATGACAGCTCCAAAAACATAATAAAGACAATCAGCAACAGACTCA 1140
||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||
Sbjct 1139 AGATGATAACTGTAAATGATAGCTCCAAAAATATAATAAAGACAATTAGCAACAGGCTCA 1198
Query 1141 GCGCATTATCATTTCACATCAGAGAAAATTATTGGGTTGACAAAAACAAAATTAATGAAA 1200
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1199 GCGCATTATCATTTCACATCAGAGAAAACTATTGGGTTGACAAAAACAAAATCAATGAAA 1258
Query 1201 TTTACCGTTACAAGACAGAGGAGTACTCCATGGACGCCACCAACAAGTTCAATATCTACC 1260
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1259 TTTACCGTTACAAGACAGAGGAGTACTCTATGGACGCCACCAACAAGTTCAATATCTACC 1318
Query 1261 CGGAACAGGTTTCTCCATGGCTAATGGATTGGGTTCCTGAAAGTCCTGACTCGGGATTCC 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1319 CGGAACAGGTTTCTCCATGGCTAATGGATTGGGTTCCTGAAAGTCCTGACTCTGGATTCC 1378
Query 1321 TGATAGGAAACCTCCAGCCTGCTCACATGGATTTCAGGTTCTTCACCTTGGGAAACCTCT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TGATAGGAAACCTCCAGCCTGCTCACATGGATTTCAGGTTCTTCACCTTGGGAAACCTCT 1438
Query 1381 GGTCAATCATCTCCTCACTAGGAACACCAAAACATAACCAAGCTATATTAAATTTGATTG 1440
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1439 GGTCAATCATCTCCTCACTAGGAACACCAAAACAGAACCAAGCTATATTAAATTTGGTTG 1498
Query 1441 AAGAGAAATGGGACGATCTTGTTGGTCATATGCCGCTTAAGATATGTTACCCGGCTTTGG 1500
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 1499 AAGAGAAATGGGACGATCTCGTTGGGCATATGCCGCTTAAGATATGTTACCCGGCTTTAG 1558
Query 1501 AATCTTCAGAGTGGCATATAATCACCGGGAGTGACCCAAAGAACACGCCTTGGTCTTACC 1560
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1559 AATCTTCAGAGTGGCATATAATAACCGGGAGTGACCCAAAGAACACGCCTTGGTCTTACC 1618
Query 1561 ACAATGGCGGGTCATGGCCAACACTTCTCTGGCAATTCACACTGGCATGCATCAAGATGG 1620
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1619 ACAATGGTGGGTCATGGCCAACACTTCTCTGGCAATTCACACTAGCATGCATCAAGATGG 1678
Query 1621 ATAGACCAGAATTAGCAGAGAAAGCAGTTACCATGGCAGAGAAGAGGCTCCAAGCTGATC 1680
||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1679 GTAGACCAGAGTTAGCAGAGAAAGCAGTAACCTTGGCAGAGAAGAGGCTCCAAGCTGATC 1738
Query 1681 GGTGGCCAGAGTACTACGATACAAGAGACGGGAAGTTCATTGGAAAACAGTCCAGGCTTT 1740
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 GATGGCCAGAGTACTACGATACAAGAGACGGGAAGTTCATTGGAAAACAGTCCAGGCTTT 1798
Query 1741 ACCAGACATGGACAATTGCTGGTTTCTTAACTTCAAAGCAATTGTTGCAGAATCCTGAAA 1800
||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct 1799 ACCAGACATGGACAATTGCTGGTTTCTTAACTTCAAAACAGCTATTGCAGAATCCTGAAA 1858
Query 1801 TAGCATCTTCCTTGTTCTGGGAAGAAGATCTTGAACTTCTAGAGTCTTGCGTGTGCGTTC 1860
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1859 TAGCATCATCCTTGTTCTGGGAAGAAGATCTTGAGCTTCTAGAGTCTTGCGTCTGCGTTC 1918
Query 1861 TCACGAAATCAGGCCGGAAGAAATGTTCACGAGCTGCAGCAAAGTCTCAGATTCTTATCT 1920
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1919 TCACCAAATCAGGCCGGAAGAAATGTTCACGAGCCGCAGCAAAGTCTCAGATTCTTATAT 1978
Query 1921 AAATTG 1926
||||||
Sbjct 1979 AAATTG 1984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96184244220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5