BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928195
Length=314
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05858.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 477 3e-134
AT5G26620.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 169 2e-41
> AT3G05858.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G26620.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr3:1749342-1749871 FORWARD LENGTH=530
Length=530
Score = 477 bits (258), Expect = 3e-134
Identities = 288/302 (95%), Gaps = 3/302 (1%)
Strand=Plus/Plus
Query 12 TAAATAA-TAATGGGTGG-AAACAAAAGGTCTCACAGTAGCAAGAGGTTCTCTCTATTCA 69
||| ||| |||||||||| ||| || || |||||||||||||||||||||||||| ||||
Sbjct 113 TAATTAACTAATGGGTGGTAAA-AATAGATCTCACAGTAGCAAGAGGTTCTCTCTCTTCA 171
Query 70 GCTTCTTCAAAACACGAAGATCTCACAGAGTGGAAGTAGACGGCTCATGGGACGACGTCG 129
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 172 GCTTCTTCAAAACACGAAGATCTCACAGAGTGGAAGCAGACGGCTCATGGGACGACTTCG 231
Query 130 GTTACACTCGCAAGGCAATGGCTAGTGATGAGGACAAACGTTATTGGGTCGCTGAACCAG 189
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 232 GTTACACTCGCAAGGCAATGGCTAGTGATGAAGACAAACGTTATTGGGTCGCTGAACCAG 291
Query 190 GCATCGACCGTAAAGCTTCTGCCTTCATCGCCAAGTTTCATGCGACTCGTGTCTCTGAGT 249
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 292 GCATCGACCGTAAAGCGTCTGCCTTCATCGCCAAGTTTCATGCAACTCGTGTCTCTGAGT 351
Query 250 CTGAGCGTCAGACTCTCTCTCCTTACCGATCCGACAAGGCATGATGAATATGATGATCAA 309
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 352 CTGAGCGCCAGACTCTCTCTCCTTACCGATCCGAAAAGGCATGATGAATATGATGATCAA 411
Query 310 GA 311
||
Sbjct 412 GA 413
> AT5G26620.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G05858.1);
Has 48 Blast hits to 48 proteins in 8 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:9366697-9366963
REVERSE LENGTH=225
Length=225
Score = 169 bits (91), Expect = 2e-41
Identities = 161/194 (83%), Gaps = 8/194 (4%)
Strand=Plus/Plus
Query 92 TCACAGAGTGGAAG-TAGACGGC-TCATGGGACGACGTCGGTTACACTCGCAAGGCAAT- 148
||| ||||| |||| | || || ||||||||||||||| |||||| | ||||| ||
Sbjct 24 TCATAGAGTTGAAGCT-GA-TGCATCATGGGACGACGTCATTTACACAAGAAAGGC-ATG 80
Query 149 GGCTAGTGATGAGGACAAACGTTATTGGGTCGCTGAACCAGGCATCGACCGTAAAGCTTC 208
||| || || |||||||| ||||||||||| ||||| ||||| || ||||||||||||||
Sbjct 81 GGCCAGCGACGAGGACAAGCGTTATTGGGTAGCTGAGCCAGGTATTGACCGTAAAGCTTC 140
Query 209 TGCCTTCATCGCCAAGTTTCATGCGACTCGTGTCTCTGAGTCTGAGCGTCAGACTCTCTC 268
|||||||||||||||||| ||||| |||||||||||||||| || || || ||||| ||
Sbjct 141 TGCCTTCATCGCCAAGTTCCATGCCTCTCGTGTCTCTGAGTCCGAACGCCAAACTCT-TC 199
Query 269 -TCCTTACCGATCC 281
||||| || ||||
Sbjct 200 CTCCTTGCCAATCC 213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14577647210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5