BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg928195 Length=314 Score E Sequences producing significant alignments: (Bits) Value AT3G05858.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 477 3e-134 AT5G26620.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 169 2e-41 > AT3G05858.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:1749342-1749871 FORWARD LENGTH=530 Length=530 Score = 477 bits (258), Expect = 3e-134 Identities = 288/302 (95%), Gaps = 3/302 (1%) Strand=Plus/Plus Query 12 TAAATAA-TAATGGGTGG-AAACAAAAGGTCTCACAGTAGCAAGAGGTTCTCTCTATTCA 69 ||| ||| |||||||||| ||| || || |||||||||||||||||||||||||| |||| Sbjct 113 TAATTAACTAATGGGTGGTAAA-AATAGATCTCACAGTAGCAAGAGGTTCTCTCTCTTCA 171 Query 70 GCTTCTTCAAAACACGAAGATCTCACAGAGTGGAAGTAGACGGCTCATGGGACGACGTCG 129 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 172 GCTTCTTCAAAACACGAAGATCTCACAGAGTGGAAGCAGACGGCTCATGGGACGACTTCG 231 Query 130 GTTACACTCGCAAGGCAATGGCTAGTGATGAGGACAAACGTTATTGGGTCGCTGAACCAG 189 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 232 GTTACACTCGCAAGGCAATGGCTAGTGATGAAGACAAACGTTATTGGGTCGCTGAACCAG 291 Query 190 GCATCGACCGTAAAGCTTCTGCCTTCATCGCCAAGTTTCATGCGACTCGTGTCTCTGAGT 249 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 292 GCATCGACCGTAAAGCGTCTGCCTTCATCGCCAAGTTTCATGCAACTCGTGTCTCTGAGT 351 Query 250 CTGAGCGTCAGACTCTCTCTCCTTACCGATCCGACAAGGCATGATGAATATGATGATCAA 309 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 352 CTGAGCGCCAGACTCTCTCTCCTTACCGATCCGAAAAGGCATGATGAATATGATGATCAA 411 Query 310 GA 311 || Sbjct 412 GA 413 > AT5G26620.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:9366697-9366963 REVERSE LENGTH=225 Length=225 Score = 169 bits (91), Expect = 2e-41 Identities = 161/194 (83%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 92 TCACAGAGTGGAAG-TAGACGGC-TCATGGGACGACGTCGGTTACACTCGCAAGGCAAT- 148 ||| ||||| |||| | || || ||||||||||||||| |||||| | ||||| || Sbjct 24 TCATAGAGTTGAAGCT-GA-TGCATCATGGGACGACGTCATTTACACAAGAAAGGC-ATG 80 Query 149 GGCTAGTGATGAGGACAAACGTTATTGGGTCGCTGAACCAGGCATCGACCGTAAAGCTTC 208 ||| || || |||||||| ||||||||||| ||||| ||||| || |||||||||||||| Sbjct 81 GGCCAGCGACGAGGACAAGCGTTATTGGGTAGCTGAGCCAGGTATTGACCGTAAAGCTTC 140 Query 209 TGCCTTCATCGCCAAGTTTCATGCGACTCGTGTCTCTGAGTCTGAGCGTCAGACTCTCTC 268 |||||||||||||||||| ||||| |||||||||||||||| || || || ||||| || Sbjct 141 TGCCTTCATCGCCAAGTTCCATGCCTCTCGTGTCTCTGAGTCCGAACGCCAAACTCT-TC 199 Query 269 -TCCTTACCGATCC 281 ||||| || |||| Sbjct 200 CTCCTTGCCAATCC 213 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14577647210 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5