BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928199
Length=220
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05870.1 | Symbols: APC11 | anaphase-promoting complex/cyclo... 368 1e-101
> AT3G05870.1 | Symbols: APC11 | anaphase-promoting complex/cyclosome
11 | chr3:1753467-1755631 FORWARD LENGTH=592
Length=592
Score = 368 bits (199), Expect = 1e-101
Identities = 214/221 (97%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 1 GAAACATGTGGGATATGTCGGATGGCTTTTGATGGTTGTTGTCCTGATTGCAAACTTCCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 GAAACATGTGGGATATGTCGGATGGCTTTTGATGGTTGTTGTCCTGATTGCAAACTTCCT 167
Query 61 GGAGATGATTGCCCTCTAATTTGGGGAGCTTGCAATCACGCGTTTCATCTTCACTGTATA 120
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 168 GGAGATGATTGCCCTCTAATTTGGGGAGCCTGCAACCACGCGTTTCATCTTCACTGTATA 227
Query 121 TTGAAATGGGTGAATTCACAGACGAGTCAAGCTCATTGCCCAATGTGTC-GAAGAGAATG 179
||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||||||
Sbjct 228 TTGAAATGGGTGAATTCGCAGACGAGCCAAGCTCATTGCCCAATGTG-CAGAAGAGAATG 286
Query 180 GCAGTTCAAAGAGTAAGCAAGTTATGAGGAGGATTATTCTG 220
|||||||||||||||||||||||||||||||||||| ||||
Sbjct 287 GCAGTTCAAAGAGTAAGCAAGTTATGAGGAGGATTAGTCTG 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9852478804
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5