BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928206

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05935.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   165    3e-40


> AT3G05935.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; Has 10 Blast hits to 10 proteins 
in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr3:1771962-1772599 REVERSE LENGTH=638
Length=638

 Score =  165 bits (89),  Expect = 3e-40
 Identities = 95/98 (97%), Gaps = 0/98 (0%)
 Strand=Plus/Plus

Query  291  CCTGACCCTGAAGATGTCAACTTTACGCTTAGGGTTCTGCTACAGACCAATGATTTCTTC  350
            |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct  284  CCTGACCCTGAAGATGACAACTTTAAGCTTAGGGTTCTGCTACAGACCAATGATTTCTTC  343

Query  351  TCCAAGGACTCTAATCCACATCTCTGTTTGTAAGTTCA  388
            |||||||| |||||||||||||||||||||||||||||
Sbjct  344  TCCAAGGATTCTAATCCACATCTCTGTTTGTAAGTTCA  381


 Score =  130 bits (70),  Expect = 1e-29
 Identities = 167/210 (80%), Gaps = 22/210 (10%)
 Strand=Plus/Plus

Query  61   ACAATGAACATAACGAGAGAGATAATGATAACACCATTaagaagaagaagaagaaaaagg  120
            |||||||||| ||||||||||||  |||| | | ||| || || ||||||||||||||||
Sbjct  93   ACAATGAACAGAACGAGAGAGATCCTGAT-A-A-CATCAACAACAAGAAGAAGAAAAAGG  149

Query  121  aagCTAAAGGGAATCGATTCTTGATCCCTTTCGTCTCAAAAGCTAAGAAACAAATCGTAT  180
            || ||  |  |  | || | || |   | | |||||| ||||| ||||||| |||||| |
Sbjct  150  AATCTCCATTG--TTGA-T-TT-A---C-TCCGTCTCGAAAGCAAAGAAACGAATCGTGT  200

Query  181  CTAAGATCACAAGGAAACCCTTATCGCC---T--G----CTTCTTCTGGGTTTTGGAAAA  231
            ||||| ||| ||||| ||||||||||||   |  |    |||||||||||||||||||||
Sbjct  201  CTAAGTTCAGAAGGAGACCCTTATCGCCGAATACGTCTCCTTCTTCTGGGTTTTGGAAAA  260

Query  232  GAGTCTGCTTTTGTGGAACTGAACCT-ACC  260
            |||||||||||||||||| ||||||| |||
Sbjct  261  GAGTCTGCTTTTGTGGAATTGAACCTGACC  290



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19051476871


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5