BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928207

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05936.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   532    7e-151


> AT3G05936.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:1773832-1774589 
REVERSE LENGTH=758
Length=758

 Score =  532 bits (288),  Expect = 7e-151
 Identities = 354/385 (92%), Gaps = 8/385 (2%)
 Strand=Plus/Plus

Query  4    CTTTAAAAGAGACCGAGATGTTGCAGGTTGTAGGCAAGTACCGTTGGAGACAATCATATC  63
            ||||| |||| || |||||||||||| |||||||||||||||| ||||||||||| ||||
Sbjct  170  CTTTATAAGAAACAGAGATGTTGCAGATTGTAGGCAAGTACCGGTGGAGACAATCTTATC  229

Query  64   GGTACAAGAAGCTAACTGATCAACATGAGAAATTGACAACAACACCACCCACGACAACAA  123
            ||||||||||||||||||||||    |||| |||||||||| ||||| ||| |   | ||
Sbjct  230  GGTACAAGAAGCTAACTGATCATGGCGAGAGATTGACAACACCACCA-CCA-G---A-AA  283

Query  124  CAACAACGAGGTCGTCGGCCAAAAGACAGAACTTGGGGAAGAAGAACGAG-CTTCGAGCA  182
             ||||||||||||| || |||||||||||||||||||||||||||||||| | |||||||
Sbjct  284  GAACAACGAGGTCGCCGACCAAAAGACAGAACTTGGGGAAGAAGAACGAGAC-TCGAGCA  342

Query  183  AAAGGGTTCAGAGTAAATCGGTCAAGGAAGCTGGTCCTTAAGGCATTAGCTTTGCCCACA  242
            |||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| | |
Sbjct  343  AAAGGGTTCAGAGTAAATCGATCAAGGAAGCTGGTTCTTAAGGCACTAGCTTTGCCAAGA  402

Query  243  AGGATCTTAAACATTTATATGCGCATCACAAATCAGATGAACAAAGAAGGTTTATATCCT  302
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  403  AGGATCTTTAACATTTATATGCGCATCACAAATCAGATGAACAAAGAAGGTTTATATCCT  462

Query  303  AATCTTGTTTTCTCTTCTCATTGGGGTTTCCCTGGTCTGCTGAATTCAAGAGGTGGATTC  362
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  463  AATCTTGTTTTCTCTTCTCATTGGGGTTTCCCTGGTTTGCTGAATTCAAGAGGTGGATTC  522

Query  363  CGTTAGTGAGAAGATATCTTATTCT  387
            ||||||||||||||||||| |||||
Sbjct  523  CGTTAGTGAGAAGATATCTGATTCT  547



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18297460636


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5