BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928208

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05937.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   486    5e-137


> AT3G05937.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:1775902-1776775 
REVERSE LENGTH=874
Length=874

 Score =  486 bits (263),  Expect = 5e-137
 Identities = 308/329 (94%), Gaps = 5/329 (2%)
 Strand=Plus/Plus

Query  24   AGCAGCAACGGCGTTTGGCAGAGC-A-A-CAACGGTTACCATAGCTATGGATATGGAGGA  80
            |||||||||||||||||||||||| | |  ||||||||| ||||||||||||||||||||
Sbjct  313  AGCAGCAACGGCGTTTGGCAGAGCAATAGTAACGGTTACTATAGCTATGGATATGGAGGA  372

Query  81   GGATACGTGGAGAAGAGACAACTATTCCTTAAGAGCTACCAATTCTCAAGGAAACAGAGT  140
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  373  GGATACGTGGAGAAGAGACAACTATTCCTTAAGAGCTACCAATTCTCGAGGAAACAGAGT  432

Query  141  TTAACAGAGAAGATCAAGATATCCGTGAAGAGAGTGGCGAAGAAAGTTGTTTGGATGAGG  200
            || ||||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||
Sbjct  433  TTCACAGAGAAGATTAAGATATCCATGAAGAGAGTGGTGAAGAAAGTTGTTTGTATGAGG  492

Query  201  TTGAAATCTGCTAGAAGACTGAAACGCGTCGTTTGGTCACGTCTCAAAACGGCGTTTTTC  260
            |||||||||||||||||| ||||||||||||||||||| || || |||||||||||||||
Sbjct  493  TTGAAATCTGCTAGAAGATTGAAACGCGTCGTTTGGTCGCGGCTGAAAACGGCGTTTTTC  552

Query  261  TACCGCCGTAGACGTTTCTTTCGTCTCCTTCATCCAAACAAACCCTCTTCCTACTGTTTC  320
            |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct  553  TACCGCCGTAGACGTTTCCTTCGTCTCCTTCATCCAAACAAATCCTCTTCCTACTGTTTC  612

Query  321  TACTAGGGTTTCTCTTTGA-CTTCTTGTC  348
            ||||||| |||||||||   |||||||||
Sbjct  613  TACTAGG-TTTCTCTTTTCTCTTCTTGTC  640



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16286750676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5