BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928214
Length=613
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05975.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 865 0.0
> AT3G05975.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr3:1792145-1792714
REVERSE LENGTH=570
Length=570
Score = 865 bits (468), Expect = 0.0
Identities = 538/572 (94%), Gaps = 4/572 (1%)
Strand=Plus/Plus
Query 23 ATGTCCAAACGACGCATTTGCTGCATAGTTTCCGCAATCAT-TATTGTCCTCTTCGCCAT 81
|||||||| ||||||||||||||||||||||||| |||||| | |||||||||||| ||
Sbjct 1 ATGTCCAAGCGACGCATTTGCTGCATAGTTTCCGGAATCATCT-TTGTCCTCTTCGTAAT 59
Query 82 CTTCATGGCCGCTTTGATCCTTGCGCAAGTGTTCAAACCAAAACATCCCATTCTACAAAC 141
||||||| |||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 60 CTTCATGACCGCTTTGATCCTTGCACAAGTGTTCAAACCAAAACATCCGATACTACAAAC 119
Query 142 CGTCTCTTCAACTGTTGATGGCATATCTACAAATATATCACTACCATATGAGGTCCAACT 201
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 CGTCTCTTCAACTGTTGATGGCATATCTACAAATATATCACTACCATACGAGGTCCAACT 179
Query 202 AAATTTCACTCTTACACTTCAGATGCTGCTCAAGAATCCTAACGTTGCGGATTTTGAATA 261
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAATTTCACTCTTACGCTGGAGATGCTGCTCAAGAATCCTAACGTTGCGGATTTTGAATA 239
Query 262 CAAGACAGTGGAAAACTTGGTTTATTACAGGGATACACTAGTGGGAAATCTCACTCTTCC 321
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 240 CAAGACAGTGGAAAACTTGGTTTATTACAGGGATACACTAGTCGGAAATCTCACACTTCC 299
Query 322 TTCGAGCACATTACCTGCCAAAGGCTCAGTGCTTTTGGCATGTCCTCTTTTTCTTCAGCT 381
|||||||||||||||||||||||| |||||||||||| |||||||||| ||||| |||||
Sbjct 300 TTCGAGCACATTACCTGCCAAAGGTTCAGTGCTTTTGCCATGTCCTCTATTTCTCCAGCT 359
Query 382 CGATAAATTTGTCGCGAATTTAGGTGATATCGTGCAAGATGTATTGCATGGAAAAATTGT 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGATAAATTTGTCGCGAATTTAGGTGATATCGTGCAAGATGTATTGCATGGAAAAATTGT 419
Query 442 GATGGAGACAA-AGGCAAGAATGCCAGGAAAAATCACGTTGTTGGGAATCTTTAAGATTC 500
||||||||||| || ||| |||||||||||||||||| |||||||||||||||||||| |
Sbjct 420 GATGGAGACAAGAG-CAAAAATGCCAGGAAAAATCACTTTGTTGGGAATCTTTAAGATAC 478
Query 501 ATTTGGATTCAATATCGCATTGCAACCTCGTACTTGGCTTTCCTTCGATGGAAGTGGTGG 560
|||||||||||||||||||||||| |||||||| ||||||||||| |||| ||||| ||
Sbjct 479 CTTTGGATTCAATATCGCATTGCAATCTCGTACTCGGCTTTCCTTCAATGGTAGTGGAGG 538
Query 561 ATCAAGTGTGTGATCTCAGCACTAAGCTGTAA 592
| |||||||||||||||| ||||||||||||
Sbjct 539 ACCAAGTGTGTGATCTCAAAACTAAGCTGTAA 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29537678436
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5