BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928215
Length=788
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05980.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1155 0.0
> AT3G05980.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G19340.1);
Has 202 Blast hits to 202 proteins in 28 species: Archae -
0; Bacteria - 0; Metazoa - 39; Fungi - 4; Plants - 148; Viruses
- 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr3:1795337-1796486
FORWARD LENGTH=1150
Length=1150
Score = 1155 bits (625), Expect = 0.0
Identities = 728/777 (94%), Gaps = 10/777 (1%)
Strand=Plus/Plus
Query 13 TAGAAGAAATGGTTTCAGAGACGGTTTCAAACACGGAATCACCACCGTTGCTTGGACCTC 72
||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 170 TAGAAGAAATGGTTTTAGAGACGGTTTCAAAGACGGAACCACCACCGTTGCTTGGACCTC 229
Query 73 GTATTTCCTTCTCAGCTGATTTATCCGACGGTGGAGATTTCATCTGCATCACCCCCGTAA 132
|||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 230 GTATCTCCTTCTCATCTGATTTATCTGACGGTGGAGATTTCATCTGCATCACCCCCGTAA 289
Query 133 TGTGTAAGGAGTTAGAGAAAGATGTCGTCAAAGGGTCAGTGAAAGTCTCCGACTTTGAGT 192
||||| | || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TGTGT----A---AG-G-AAGATGTCGTCAAAGGGTCAGTGAAAGTCTCCGACTTTGAGT 340
Query 193 TCTTGTCGTCTGAAAATGTGAGTCCCCAGAGAATGCTTACCGCTGATGAACTCTTCTCCG 252
|||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 341 TCTTGTCGTCGGAAAATGTGAGTCCACAGAGAATGCTTACCGCCGATGAACTCTTCTCCG 400
Query 253 AAGGTAAGTTGCTTCCTTTTTGGCAAGCAAAGCACTCAGAGAAGCTTAAAAACATTACTT 312
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 401 AAGGTAAATTGCTTCCTTTTTGGCAAGTAAAGCACTCAGAGAAGCTTAAAAACATTACTT 460
Query 313 TgaagacgaacgaagaagaagaaggagagaaacgtaaagtggaagtgatgaagaaagaTC 372
|||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 461 TGAAGACGAACGAAGAGGAAGAAGCAGAGAAACGTAAAGTGGAAGTGAAGAAGAAAGATC 520
Query 373 AGGAGATTAATAATAGAGACAACAGAGTGAGTTGGTTTATAGACGAAGATCCATCTCCTC 432
|||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||||
Sbjct 521 AGGAGATTAACAATAGAGATAACAGAGTGACTTGGTTTATAGACGAAGATCCGTCTCCTC 580
Query 433 GTCCTCCTAAATGTACGGTTCTTTGGAAAGAGCTTTTGAGATTGAAGAAACAGAGGAATC 492
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 GTCCTCCCAAGTGTACCGTTCTTTGGAAAGAGCTTTTGAGATTGAAGAAACAGAGGAATC 640
Query 493 CGTCTTCGTCGTCGGTGGCAGTGAGGACGGTGTCTTCTCTGTCTCCGTCGTCGTCCACGT 552
||||||| ||| ||||| | | |||||| ||||| ||| |||||||||||||||||||||
Sbjct 641 CGTCTTCTTCGCCGGTGACGGCGAGGACAGTGTCGTCTTTGTCTCCGTCGTCGTCCACGT 700
Query 553 CATCATCGAGCTCGCTTGAGGATGCAGCgaagagagaggagaaagagaaagaagggaaga 612
||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 701 CATCATCAAGTTCACTTGAGGACGCAGCGAAGAGAGAGGAGAAAGAGAAAGAAGGGAAGA 760
Query 613 gaggtaagaaaggattagagagaacgagaTCGGCGAGTATGAGGATAAGGCCGATGATTC 672
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 761 GAGGTAAGAAAGGATTAGAGAGAACGAGATCGGCGAGTATGAGGATAAGGCCAATGATTC 820
Query 673 ATGTTCCTATTTGCACTCCTTCTAAATCCTCTCTTCCTTTGCCTCCTCTGTTTCCTCTTG 732
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 ATGTTCCTATTTGCACTCCTTCTAAATCCTCTCTTCCTTTGCCTCCTCTGTTTCCTCTTT 880
Query 733 CGCTTAAGAAAAACAGAGTAGAGCGACGCACTTAGAAGATTTGAGCT-TCTTTGGAT 788
||||||||||||||||||||||| ||||| | |||||||||||| || |||||||||
Sbjct 881 CGCTTAAGAAAAACAGAGTAGAGAGACGCGCCTAGAAGATTTGATCTATCTTTGGAT 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38328654161
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5