BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928221
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06020.1 | Symbols: | Protein of unknown function (DUF3049)... 1277 0.0
> AT3G06020.1 | Symbols: | Protein of unknown function (DUF3049)
| chr3:1813267-1814169 FORWARD LENGTH=903
Length=903
Score = 1277 bits (691), Expect = 0.0
Identities = 847/917 (92%), Gaps = 31/917 (3%)
Strand=Plus/Plus
Query 21 ATGGCAACTGTTGTATATCAATCTTATTTTGAGTCTCAACACTTTGAGCCAAGAGCTCTC 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAACTGTTGTATATCAATCTTATTTTGAGTCTCAACACTTTGAGCCAAGAGCTCTC 60
Query 81 AGACTCAGACTTTCTTCTCATACAAATCCTC-ACTTATCCACACCTCTTAAATCCCATTT 139
||||||||||| ||||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct 61 AGACTCAGACTCTCTTCTCATACAAATCCTCAAC-TATCCACACCTCTCAAATCCCATTT 119
Query 140 CCAAGATTCTTCCATTGCTCCACAAGACAACACTACTACCATTAATGCAGCCTCCTTGTC 199
|||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
Sbjct 120 CCAAAATTCTTCCATTGCTCCACAAGACAACCCTATTACCATTAATGCAGCCTCCTTGCC 179
Query 200 CTTATCAGGTCCCAACCCCG-GCTCTAACTCGGACTCTAACTCGGGAAGTTGGAGCTTCC 258
|| |||| ||||||| |||| |||||||||||||| | ||||||||||||||||||||||
Sbjct 180 CTCATCAAGTCCCAA-CCCGAGCTCTAACTCGGACACCAACTCGGGAAGTTGGAGCTTCC 238
Query 259 TCGAGTCCCTTTCAAACTCGAGCTCTAATGATAAAGAGAAGAAGACATTATCACTATTTC 318
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 239 TCGAGTCCCTTTCAAACTCGAGCTCTAATGATAAAGAGAAGAAGACATTACCACTCTTTC 298
Query 319 AGTCTCCATC-TGCTCGTAGAACTCTCAGCGATGAGAGCTTAGCATTGTGCACTGAGAGC 377
| |||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 299 AATCTCCATCCT-CTCGTAGAACTCTCAGCGACGAGAGCTTAGCATTGTGCACTGAGAGC 357
Query 378 CTCGGGAGCGAGACCGGCTCTGATATCATTCATGAAGATGAAGATATGTTTTCGATTTCA 437
|| ||||||||||| |||||||||||||||||||||||| | | ||| |||||||||
Sbjct 358 CTTGGGAGCGAGACGGGCTCTGATATCATTCATGAAGAT-A---T--GTTCTCGATTTCA 411
Query 438 TCTGAATTACAAACCATGGAAACTAGAACTACGTCGATAACATC-AAGGCCATCACGACA 496
|||||||||||||| |||||||||||||| ||||||| |||||| || |||||| ||||
Sbjct 412 TCTGAATTACAAACTATGGAAACTAGAACCACGTCGACAACATCGAAT-CCATCAAGACA 470
Query 497 AGATATGAAGAGGAATA-AGATGGCTTCACTTCCACCTCCTTTGGCAAGTATGAGAGGTT 555
||||| ||||||||||| | |||||||||||||||||||||||| ||||||||| |||||
Sbjct 471 AGATAGGAAGAGGAATACA-ATGGCTTCACTTCCACCTCCTTTGACAAGTATGATAGGTT 529
Query 556 TTGATTGCATTGAAGTCAAGTCACACCGTGAAAATGGAAGATTGGTAATGACGGCCACAA 615
|||||||||||||||||||||| ||||||||||| |||||||| ||||||| |||||| |
Sbjct 530 TTGATTGCATTGAAGTCAAGTCGCACCGTGAAAACGGAAGATTAGTAATGATGGCCACGA 589
Query 616 GACCTCCTCCGCGTAATCGTTGCCTTCAGGACCGAAGCAATGGCTGTGTAAGACTCGCTA 675
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 590 GACCTCCTCCGCGTAATCGTTGCCTTCAGGACCGAAGCAATGGCTGTGTCAGACTCGCTA 649
Query 676 TCTTGATTGATTCTGATGACCACATCgagacagagaccaaagaagaa---gaagaaga-g 731
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 650 TCTTGATTGATTCTGATGACCACATAGAGACAGAGACCAAAGAAGAAAAAGAAGAAGAAG 709
Query 732 a--------caatcgagaccgtgagaaataccgaagaagagattccagaaTACGAGGAAG 783
| ||||||||||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 710 AGGAAGAAACAATCGAGACCGTGAGAGATAACGAAGAAGAGATTCCAGAATACAAGGAAG 769
Query 784 AAGTTGAAGaaaaaaaagaagaagaaatcaaagtaaagagtgttgagaaagtacaaagat 843
||| ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 770 AAG---AAGAAGAAAAAGAAGAAGAAATCAAAGTAAAGGGTGTTGAGAAAGTTCAAAGAT 826
Query 844 caagaagaTGTATTGAAGGAGATCGAGAAAACAGAGGATTTCTAAATTGGGAATCTTTAT 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 CAAGAAGATGTATTGAAGGAGATCGAGAAAACAGAGGATTTCTAAATTGGGAATCTTTAT 886
Query 904 GTTTTGCCACTTCCTAA 920
|| ||||||||||||||
Sbjct 887 GTGTTGCCACTTCCTAA 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014478652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5