BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928230

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G06080.2 | Symbols:  | Plant protein of unknown function (DU...   265    2e-70


> AT3G06080.2 | Symbols:  | Plant protein of unknown function (DUF828) 
| chr3:1834707-1837984 REVERSE LENGTH=2122
Length=2122

 Score =  265 bits (143),  Expect = 2e-70
 Identities = 161/170 (95%), Gaps = 0/170 (0%)
 Strand=Plus/Plus

Query  15    AACAGCAATGGCTGCTCAAAGAAAAGACGGTCATCCATCGCTTTACTATCACGGTCCGCT  74
             ||| ||||||||||||||||||||||| ||||| ||||| || ||||||| |||||||| 
Sbjct  1645  AACGGCAATGGCTGCTCAAAGAAAAGATGGTCACCCATCACTCTACTATCTCGGTCCGCA  1704

Query  75    TGGTCCTGCACCGCTGCATCGCCAAGACTGTAGCCACTGGTGTCTTCCCGGTGTTCCTGA  134
             ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct  1705  TGGTCCTGCACCGCTTCATCGCCAAGACTGTAGCCACTGGTGCCTTCCCGGTGTTCCTGA  1764

Query  135   CACGTGGAACGAGCTCTTCTATGCATTATTTATGAAACAAGAAGCTCCTT  184
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1765  CACGTGGAACGAGCTCTTCTATGCATTATTTATGAAACAAGAAGCTCCTT  1814



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13672827728


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5