BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928231
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06080.2 | Symbols: | Plant protein of unknown function (DU... 2183 0.0
> AT3G06080.2 | Symbols: | Plant protein of unknown function (DUF828)
| chr3:1834707-1837984 REVERSE LENGTH=2122
Length=2122
Score = 2183 bits (1182), Expect = 0.0
Identities = 1333/1407 (95%), Gaps = 6/1407 (0%)
Strand=Plus/Plus
Query 12 TACCTTCAGATGTCTAAGAACTCAAACCTTGAAGAAAACGGAGGAGCAAAGCCAATCTGT 71
||| ||||||||||||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct 452 TACTTTCAGATGTCTAAGAACTCAAACGTTGAAGAGAATGGAGGAGCAAAGCCAATCTGT 511
Query 72 GAAGCTTTGAAGAGATTCAAAAGGTCGAGACTTGTGTTCGAGCCGTCTTTAGGAGTGTTG 131
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 512 GAAGCTTTGAGGAGATTCAAAAGGTCGAGGCTTGTGTTCGAGCCGTCTTTAGGAGTGTTG 571
Query 132 GGGTTCTTT-TTGGTTGGGGTGTGTTTGGTTTGCAGTTTTTTCTTATTTGATTACAGAAA 190
||||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 572 GGGTT-TTTCTTGGTTGGGGTCTGTTTGGTTTGCAGTTTTTTCTTCTTTGATTACAGAAG 630
Query 191 CGTAGCTAGAAGCTATGGCCTTTCGGATAAATCAGACAGATTCGTTTGGCTCAAGCTTGA 250
||| |||| |||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 631 CGTTGCTAAAAGCTATGGCCTTTCGGATAAATCTGAGAGATTCGTTTGGCTCAAGTTTGA 690
Query 251 C-A-A-CAACATCAGCAGCAACACTAGTAGTAATAGTTCAAAGAGAGTTGGATTTCTGGA 307
| | | || || |||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct 691 CAATATCAGCAGCAGCAGCAGTAGTAGTAGTAATAGTTCAAAGAGAGTTGGGTTTCTGGA 750
Query 308 AGAGAGTGGAAGTGGGTGTGATGTGTTCGATGGAGATTGGATTTGGGACGAGTCTTATCC 367
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 751 AGAGAGTGGAAGTGGGTGTGATGTGTTCGATGGAGATTGGGTTTGGGACGAGTCTTATCC 810
Query 368 ATTGTATCAATCCAAAGATTGTAGATTTCTCGATGAAGGGTTTAGGTGTAGTGACTTTGG 427
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 811 ATTGTATCAATCCAAAGATTGCAGATTTCTCGATGAAGGGTTTAGGTGTAGTGACTTTGG 870
Query 428 AAGGTCTGATTTGTTCTATACTCAGTGGCGATGGCAACCTAGACACTGCAATTTGCCCAG 487
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 871 AAGGTCTGATTTGTTCTATACTCAGTGGCGTTGGCAACCTAGACACTGTAATTTGCCCAG 930
Query 488 ATTTGATGCTAAACTGATGCTGGAGAAACTCCGGGACAAGCGGCTAGTGTTTGTTGGAGA 547
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 931 ATTTGATGCAAAACTGATGCTGGAGAAACTCCGGGACAAGCGGCTTGTGTTTGTTGGCGA 990
Query 548 TTCAATAGGAAGAAACCAGTGGGAGTCTCTTCTGTGTCTACTATCTTCTGCAGTCAAGAA 607
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 991 TTCAATAGGAAGAAACCAGTGGGAGTCTCTACTTTGTCTACTATCTTCTGCAGTCAAGAA 1050
Query 608 CGAGAGCTTAATTTATGAAATAAATGGAAGTCCCATCACAAAGCACAAAGGGTTCTTGGT 667
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1051 CGAGAGCTTGATTTATGAAATAAATGGAAGTCCGATCACAAAGCACAAAGGGTTCTTGGT 1110
Query 668 GTTCAAATTTGAGGAGTACAATTGCACTGTGGAGTACTACAGATCACCATTTCTGGTTCC 727
||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||
Sbjct 1111 GTTCAAATTTGAGGAGTACAATTGCACAGTGGAGTACTACAGATCTCCATTTTTGGTTCC 1170
Query 728 TCAAAGCAGACCACCGATTGGATCACCCCAAAAGGTTAAGACAACTTTGAAACTGGACAC 787
||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 1171 TCAAAGCAGACCACCGATTGGATCACCTGGAAAGGTCAAGACAAGTTTGAAACTGGACAC 1230
Query 788 TATGGATTGGACTTCAAGCAAATGGAGAGATGCAAACGTTTTAGTGCTCAATACTGGTCA 847
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1231 TATGGATTGGACTTCAAGCAAATGGAGAGATGCTGACGTTTTAGTGCTCAATACTGGACA 1290
Query 848 TTGGTGGAACGAGGGAAAAACTACTAGAACGGGATGTTACTTTCAAGAAGGAGAAGAAGT 907
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 CTGGTGGAACGAGGGGAAAACTACTAGAACGGGATGTTACTTTCAAGAAGGAGAAGAAGT 1350
Query 908 GAAATTGAAGATGAATGTAGATGATGCTTATAAGCGAGCTCTGAATACCGTTGTGAAATG 967
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 AAAATTGAAGATGAATGTAGATGATGCTTATAAGCGAGCTCTGAATACCGTTGTGAAATG 1410
Query 968 GATACATACCGAGGTCGATTCAAACAAAACTCAAGTCTTCTTTCGCACATTCGCTCCCGT 1027
||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1411 GATACATACCGAGCTCGATTCAAACAAAACTCAAGTCTTCTTTCGCACTTTCGCCCCCGT 1470
Query 1028 GCATTTCAGGGGAGGAGATTGGAAAACAGGAGGAACATGTCACATGGAAACATTACCAGA 1087
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1471 GCATTTCAGGGGAGGAGATTGGAAAACAGGAGGAACATGTCATATGGAGACATTACCAGA 1530
Query 1088 GATTGGAACCTCATTGGCTTCATCAGAGACATGGGAACAGTCAAAGATCCTCAGAGATGT 1147
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1531 GATTGGAACCTCATTGGCTTCATCAGAGACCTGGGAACAGTTAAAGATCCTCAGAGATGT 1590
Query 1148 GTTGTCACATTACTCGAACAGATCAGAGACTGTTAAAATGAAAGTGTTGAACATAACGGC 1207
|||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1591 GTTGTCACATAACTCAAACAGATCAGAGACTGTTAAAGTGAAACTGTTGAACATAACGGC 1650
Query 1208 AATGGCTGCTCAAAGAAAAGACGGCCACCCATCGCTCTACTATCTTGGTCCGCTTAGTCC 1267
||||||||||||||||||||| || |||||||| ||||||||||| ||||||| | ||||
Sbjct 1651 AATGGCTGCTCAAAGAAAAGATGGTCACCCATCACTCTACTATCTCGGTCCGCATGGTCC 1710
Query 1268 TGCACCGCTGCATCGCCAAGACTGTAGCCACTGGTGCCTTCCCGGTGTTCCAGACACGTG 1327
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1711 TGCACCGCTTCATCGCCAAGACTGTAGCCACTGGTGCCTTCCCGGTGTTCCTGACACGTG 1770
Query 1328 GAACGAGGTCTTCTATGCATTATTTATGAAACAAGAAGCTCCTTCTTCTTCTAAAAGTGT 1387
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1771 GAACGAGCTCTTCTATGCATTATTTATGAAACAAGAAGCTCCTTCTTCTTCTAAAAGAGT 1830
Query 1388 TGAAGAAGCGAATACTACAGGAA-TGT 1413
|||||||||||| | |||||||| |||
Sbjct 1831 TGAAGAAGCGAACAGTACAGGAAATGT 1857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70883169540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5