BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928234
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06120.1 | Symbols: MUTE | basic helix-loop-helix (bHLH) DNA... 1024 0.0
> AT3G06120.1 | Symbols: MUTE | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:1846531-1848230 FORWARD
LENGTH=823
Length=823
Score = 1024 bits (554), Expect = 0.0
Identities = 607/632 (96%), Gaps = 6/632 (1%)
Strand=Plus/Plus
Query 21 ATGTCTCACATCGCTGTTGAAAGGAATCGAAGAAGGCAAATGAACGAGCATCTTAAATCC 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTCACATCGCTGTTGAAAGGAATCGAAGAAGGCAAATGAACGAGCATCTTAAATCC 60
Query 81 CTTCGTTCTTTGACTCCTTGTTTCTACATCAAAAGGGGTGATCAAGCTTCGATCATCGGA 140
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CTTCGTTCTTTGACTCCTTGTTTCTACATCAAAAGGGGAGATCAAGCTTCGATCATCGGA 120
Query 141 GGAGTGATCGAGTTCATCAAAGAGTTGCAGCAATTGGTGCAAGTTCTCGAGTCCAAGAAA 200
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 121 GGAGTGATAGAGTTCATCAAAGAGTTGCAGCAATTGGTTCAAGTTCTTGAGTCCAAGAAA 180
Query 201 CGTCGAAAGACACTAAACCGCCCTTCTTTCCCTTATGATCACCAAACAATCGAGCCATCC 260
||||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 181 CGTCGAAAGACCCTAAACCGACCATCTTTCCCTTATGATCACCAGACAATCGAGCCATCC 240
Query 261 AATTTAGGCGGCGCAGCCACCACCCGAGTACCGTTTAGTCGAATCGAAAATGTGATGACC 320
| |||||| || | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGTTTAGG-AGC-C-GCCACTACCCGAGTACCGTTTAGTCGAATCGAAAATGTGATGACC 297
Query 321 ACAAGTACTTTCAAGGAAGTAGGAGCATGCTGTAACTCCCCTCATGCTAACGTAGAAGCC 380
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ACAAGTACTTTCAAGGAAGTAGGAGCATGCTGTAACTCCCCTCATGCTAACGTAGAAGCA 357
Query 381 AAGATCTCTGGTTCTAACGTTGTATTGAGAGTTGTCTCTAGGCGAATCGTGGGCCAGCTC 440
||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 358 AAGATTTCAGGTTCTAATGTTGTATTGAGAGTTGTCTCTAGGCGAATCGTGGGGCAGCTC 417
Query 441 GTTAAGATCATCTCTGTCTTAGAGAAGCTATCTTTTCAAGTTCTTCACCTCAATATTAGT 500
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GTAAAGATCATCTCTGTCTTAGAGAAGCTATCTTTTCAAGTTCTTCACCTCAATATTAGT 477
Query 501 AGCATGGAGGAGACTGTCTTATACTTTTTCGTTGTTAAGATAGGATTGGAGTGTCACTTA 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGCATGGAGGAGACTGTCTTATACTTTTTCGTTGTTAAGATAGGATTGGAGTGTCACTTA 537
Query 561 AGCTTGGAGGAGCTAACTCTTGAAGTTCAGAAAAGCTTTGTGTCAGA--AA-TGATCGTC 617
|||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 538 AGCTTGGAGGAGCTAACTCTTGAAGTTCAGAAAAGCTTTGTGTCTGATGAAGTGATCGTC 597
Query 618 TCTACCAATTAAAACCAAAATTCTACATGTAC 649
|||||||||||||| |||||||||||||||||
Sbjct 598 TCTACCAATTAAAAACAAAATTCTACATGTAC 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31346107728
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5