BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg928234 Length=649 Score E Sequences producing significant alignments: (Bits) Value AT3G06120.1 | Symbols: MUTE | basic helix-loop-helix (bHLH) DNA... 1024 0.0 > AT3G06120.1 | Symbols: MUTE | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:1846531-1848230 FORWARD LENGTH=823 Length=823 Score = 1024 bits (554), Expect = 0.0 Identities = 607/632 (96%), Gaps = 6/632 (1%) Strand=Plus/Plus Query 21 ATGTCTCACATCGCTGTTGAAAGGAATCGAAGAAGGCAAATGAACGAGCATCTTAAATCC 80 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTCACATCGCTGTTGAAAGGAATCGAAGAAGGCAAATGAACGAGCATCTTAAATCC 60 Query 81 CTTCGTTCTTTGACTCCTTGTTTCTACATCAAAAGGGGTGATCAAGCTTCGATCATCGGA 140 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 CTTCGTTCTTTGACTCCTTGTTTCTACATCAAAAGGGGAGATCAAGCTTCGATCATCGGA 120 Query 141 GGAGTGATCGAGTTCATCAAAGAGTTGCAGCAATTGGTGCAAGTTCTCGAGTCCAAGAAA 200 |||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 121 GGAGTGATAGAGTTCATCAAAGAGTTGCAGCAATTGGTTCAAGTTCTTGAGTCCAAGAAA 180 Query 201 CGTCGAAAGACACTAAACCGCCCTTCTTTCCCTTATGATCACCAAACAATCGAGCCATCC 260 ||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||| Sbjct 181 CGTCGAAAGACCCTAAACCGACCATCTTTCCCTTATGATCACCAGACAATCGAGCCATCC 240 Query 261 AATTTAGGCGGCGCAGCCACCACCCGAGTACCGTTTAGTCGAATCGAAAATGTGATGACC 320 | |||||| || | ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 241 AGTTTAGG-AGC-C-GCCACTACCCGAGTACCGTTTAGTCGAATCGAAAATGTGATGACC 297 Query 321 ACAAGTACTTTCAAGGAAGTAGGAGCATGCTGTAACTCCCCTCATGCTAACGTAGAAGCC 380 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 ACAAGTACTTTCAAGGAAGTAGGAGCATGCTGTAACTCCCCTCATGCTAACGTAGAAGCA 357 Query 381 AAGATCTCTGGTTCTAACGTTGTATTGAGAGTTGTCTCTAGGCGAATCGTGGGCCAGCTC 440 ||||| || |||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 358 AAGATTTCAGGTTCTAATGTTGTATTGAGAGTTGTCTCTAGGCGAATCGTGGGGCAGCTC 417 Query 441 GTTAAGATCATCTCTGTCTTAGAGAAGCTATCTTTTCAAGTTCTTCACCTCAATATTAGT 500 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GTAAAGATCATCTCTGTCTTAGAGAAGCTATCTTTTCAAGTTCTTCACCTCAATATTAGT 477 Query 501 AGCATGGAGGAGACTGTCTTATACTTTTTCGTTGTTAAGATAGGATTGGAGTGTCACTTA 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 AGCATGGAGGAGACTGTCTTATACTTTTTCGTTGTTAAGATAGGATTGGAGTGTCACTTA 537 Query 561 AGCTTGGAGGAGCTAACTCTTGAAGTTCAGAAAAGCTTTGTGTCAGA--AA-TGATCGTC 617 |||||||||||||||||||||||||||||||||||||||||||| || || |||||||| Sbjct 538 AGCTTGGAGGAGCTAACTCTTGAAGTTCAGAAAAGCTTTGTGTCTGATGAAGTGATCGTC 597 Query 618 TCTACCAATTAAAACCAAAATTCTACATGTAC 649 |||||||||||||| ||||||||||||||||| Sbjct 598 TCTACCAATTAAAAACAAAATTCTACATGTAC 629 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31346107728 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5