BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928240
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06170.1 | Symbols: | Serinc-domain containing serine and s... 1943 0.0
AT4G11845.1 | Symbols: | Interleukin-1 receptor-associated kin... 80.5 4e-14
> AT3G06170.1 | Symbols: | Serinc-domain containing serine and
sphingolipid biosynthesis protein | chr3:1867415-1869948 FORWARD
LENGTH=1545
Length=1545
Score = 1943 bits (1052), Expect = 0.0
Identities = 1187/1253 (95%), Gaps = 5/1253 (0%)
Strand=Plus/Plus
Query 3 AAAAAATTCTCTCAAACAATGGCGTGTTGCTTAGCTTCGTGTTGTGCGTCGGCGACTTGT 62
|||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 88 AAAAAAATCTCTGAAACAATGGCGTGTTGCTTAGCTTCGTGCTGTGCGTCGGCGACTTGT 147
Query 63 GGATTATGCTCGTCGGTGGCATCGGGGATAACGAGGAAATCTGCGAGGATCGCTTATTGT 122
||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||
Sbjct 148 GGATTATGCTCGTCGGTAGCATCGGGGATATCGAGGAAATCAGCGAGGATCGCTTATTGT 207
Query 123 GGTCTCTTTGGTGCTTCTCTTGTCGTCTCCTGGATTCTTCGTGAGACTGGTGCTCCGCTC 182
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 GGTCTCTTCGGTGCCTCTCTTGTCGTCTCCTGGATTCTTCGTGAGACTGGTGCTCCGCTC 267
Query 183 CTCGAGAAACTCCCTTGGATAAACACATCCGATTCATATTCCAAAGAATGGTATCAGCAG 242
|||||||||||||||||||| || || || ||||||||| |||||||||||||||||||
Sbjct 268 CTCGAGAAACTCCCTTGGATCAATACTTCTGATTCATATACCAAAGAATGGTATCAGCAA 327
Query 243 CAAGCTGTTCTTCGTGTGAGCTTTGGGAATTTCCTTTTCTTTGCTATATATGCTTTGATC 302
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 328 CAAGCTGTTCTTCGTGTGAGCTTTGGGAATTTCCTCTTCTTTGCAATATATGCTTTGATC 387
Query 303 ATGATTGGTGTGAAGGACCAGAACGACAGGCGTGACTCATGGCACCATGGTGGATGGGGT 362
||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 388 ATGATTGGTGTCAAGGACCAGAATGACAGGCGTGACTCGTGGCACCATGGTGGGTGGGGT 447
Query 363 TTGAAGATGATCGCCTGGTTTTTGCTTGTTGTCCTCATGTTTTTTGTTCCAAATGTTATC 422
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 TTGAAGATGATTGTCTGGTTTTTGCTTGTTGTCCTCATGTTTTTTGTTCCAAATGTTATC 507
Query 423 GTCTCAATCTATGGAACTTTGTCAAAGTTTGGTGCTGGAGCGTTTCTGTTGGTTCAAGTG 482
||||| | |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 508 GTCTCGTTATATGGAACGTTGTCAAAATTTGGTGCTGGAGCGTTTCTGTTGGTTCAAGTG 567
Query 483 GTCTTATTGTTAGATGCTACACATAACTGGAATGATTCATGGGTCGAAAAGGATGaaaa- 541
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 568 GTCTTATTATTAGATGCTACACATAACTGGAATGATTCATGGGTCGAAAAGGACGAAAAG 627
Query 542 aaaGTGGTACATCGCTCTGCTTGTTATATCAATTGTGTGTTACATTGCTACATATGCCTT 601
||| |||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||
Sbjct 628 AAA-TGGTACATCGCTCTGCTTGTCATATCAATCGTGTGTTACATTGCTACATATACCTT 686
Query 602 CTCAGGAATCCTGTTCATCTGGTTCAACCCATCTGGTCAGGATTGTGGACTTAATGTTTT 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 CTCAGGAATCCTGTTCATCTGGTTCAACCCATCTGGTCAGGATTGTGGACTTAATGTTTT 746
Query 662 CTTCATCGTTGTGCCGATGATCTTGGCCTTTGTTTTTGCTATTATTGCTTTACATCCTGC 721
|||||| || |||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 747 CTTCATTGTCATGCCGATGATCTTGGCTTTTGTTTTTGCGATTATTGCTTTACATCCTGC 806
Query 722 GGTGAACGGTAGTCTTTTACCGGCATCAGTTATTTCGGTTTACTGTGCTTATGTCTGTTA 781
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 807 GGTGAATGGCAGTCTTTTACCGGCATCAGTTATATCGGTTTACTGTGCTTATGTCTGTTA 866
Query 782 CACGGGTCTCTCGAGCGAACCGCATGACTATGTTTGCAATGGACTTAACAAATCCAAGGC 841
|||||| ||||| |||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 867 CACGGGCCTCTCTAGCGAACCACATGACTATGTGTGCAATGGCCTTAACAAATCCAAGGC 926
Query 842 AGTGAACGCAAGTACCCTCATCCTCGGAATGCTCACTACGGTTCTCTCGGTTCTATACTC 901
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 927 AGTGAACGCAAGTACTCTCATCCTTGGAATGCTCACTACGGTTCTCTCGGTTCTATACTC 986
Query 902 CGCCCTCCGAGCTGGCTCTTCCACCACATTCCTCTCACCACCATCTTCCCCCAGATCAGG 961
|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 987 CGCCCTCCGAGCTGGCTCTTCCACCACATTCCTCTCGCCACCGTCTTCACCCAGATCAGG 1046
Query 962 TGTGAAGGACGCATTGTTAGAGGACCCCGAGGACGGGAAGAAGAAGAGTGGTGAAGCAGA 1021
||||||||| |||||||||| |||||| |||||| || |||||||||||||||||| ||
Sbjct 1047 TGTGAAGGATGCATTGTTAGGGGACCCTGAGGAC-GG--GAAGAAGAGTGGTGAAGCCGA 1103
Query 1022 GGCACGACCTGTGAGTTACTCATACTCCTTCTTCCATATCATCTTTGCGCTTGCGAGCAT 1081
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 GGCACGGCCTGTGAGTTACTCATACTCCTTCTTCCATATCATCTTTGCGCTTGCGAGCAT 1163
Query 1082 GTACGCTGCAATGCTTCTCTCTGGATGGACTGACTCATCAGAGAGTGCGACTCTGATCGA 1141
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1164 GTACGCTGCAATGCTTCTCTCGGGATGGACTGACTCATCAGAGAGTGCGACTCTGATCGA 1223
Query 1142 TGTGGGATGGACCTCGGTCTGGGTCAAGATATGCACCGGTTGGGTCACAGCCGTACTCTA 1201
|||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 1224 TGTGGGATGGACCTCGGTCTGGGTCAAGATATGCACGGGTTGGGTCACGGCCGGACTCTA 1283
Query 1202 CATATGGACACTCATTGCACCGCTCATCCTTCCTGATCGCGAGTTCTACTAAA 1254
||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1284 CATATGGACACTCATTGCACCACTCATCCTTCCAGATCGCGAGTTCTACTAAA 1336
> AT4G11845.1 | Symbols: | Interleukin-1 receptor-associated kinase
4 protein | chr4:7126666-7128103 REVERSE LENGTH=721
Length=721
Score = 80.5 bits (43), Expect = 4e-14
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 498 GCTACACATAACTGGAATGATTCATGGGTCGAAAAGGATGaaaaaa 543
|||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 620 GCTACACATAACTGGAATGATTCATGGGCCGAAAAGGATGAAAAAA 665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62750681250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5