BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928241
Length=700
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06180.1 | Symbols: | Ribosomal protein L34e superfamily pr... 1096 0.0
> AT3G06180.1 | Symbols: | Ribosomal protein L34e superfamily
protein | chr3:1871688-1873771 FORWARD LENGTH=960
Length=960
Score = 1096 bits (593), Expect = 0.0
Identities = 678/716 (95%), Gaps = 17/716 (2%)
Strand=Plus/Plus
Query 1 AACATTCCACCACCAATAGCATGCCCccttcctcctccgcctctagatccgccgccaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 49 AACATTCCACCACCAATAGCATGCCCCCTTCCTCCTCCGCCTCTAGATCCGCCTCCAATC 108
Query 61 acag---------------ctcctcctcctctctccacctctgcaagcactctccttccg 105
|||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 109 ACAGCTCCTCTTCCTCCTCCTCCTCCTCCTCTCTCCACCTCTGCAAGCACTCTCCTTCCG 168
Query 106 cgactctcgacctcctaatcctaatcctcgtcctcttctccggcgctttcctcctctcct 165
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 CGACTCTCGACCTCCTCATCCTAATCCTCGTCCTCTTCTCCGGCGCTTTCCTCCTCTCCT 228
Query 166 cttacttctcctatctattccactccttctctctcctctcctctcacttcccttccctct 225
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 229 CTTACTTCTCCTATCTCTTCCACTCCTTTTCTCTCCTCTCCTCTCACTTCCCTTCCCTCT 288
Query 226 cctccttgatcttctccGACGATGAAGATCTAT-CTCCAATCCCTCCGGCGTCCTACTTC 284
||||||||||||||||||||||||||||||| | || | |||||||| || |||||||||
Sbjct 289 CCTCCTTGATCTTCTCCGACGATGAAGATCTCTCCT-CGATCCCTCCCGCTTCCTACTTC 347
Query 285 TTCGCCTTCGCCGTCTTCTTCGCCGCTTCGATTGCGTTTCTCGACCTATGTTGTGGACCC 344
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 348 TTCGCCTTCGCCGTCTTCTTCGCCGCTTCAATTGCGTTTCTCGACCTTTGTTGTGGACCC 407
Query 345 AGATCGAGGAAGTGTAAGAATCCCAAGTGTAAAGGTTTGAAGAAAGCGATGGAGTTTGAT 404
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 AGATCGAGGAAGTGTCGGAATCCCAAGTGTAAAGGTTTGAAGAAAGCGATGGAGTTTGAT 467
Query 405 TTGCAATTGCAGACGGAGGAATGTGTTAAATCTGGAGCTACTAAGGAGATCGATCGATTG 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TTGCAATTGCAGACGGAGGAATGTGTTAAATCTGGAGCTACTAAGGAGATCGATCGATTG 527
Query 465 CCATGGAAAGGAGGAAGTGAGAGCAATCCTGATTACGAGTGTTTGAGGGCTGAGCTTAGA 524
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 CCATGGAAAGGAGGTAGTGAGAGCAATCCTGATTACGAGTGTTTGAGGGCTGAGCTTAGA 587
Query 525 AGGATGGCTCCGCCTAATGGCCGTGCTGTTTTACTTTTCCGATCTAGATGTGGTTGCCCT 584
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 588 AGGATGGCTCCGCCTAATGGTCGTGCTGTTTTACTTTTCCGATCTAGATGTGGTTGCCCT 647
Query 585 GTCGCTAAGCTCCAAGGTTGGGGACCTAAACGAGGCCGCCGTCATAAAAAATCGCAAGCG 644
|| |||||||| |||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 648 GTTGCTAAGCTTGAAGGTTGGGGTCCTAAACGAGGCCGGCGTCATAAAAAATCGCAAGCG 707
Query 645 AACTTGGCTCTAAAGGGAGGGGTAGACCATCGCTGATCAGGTCGATAGGAACTCTT 700
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 708 AACTTGGCTCTGAAGGGAGGGGTCGACCATCGCTGATCAGGTCGATAGGAACTCTT 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33908049225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5