BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928242
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06190.1 | Symbols: ATBPM2, BPM2 | BTB-POZ and MATH domain 2... 2106 0.0
AT5G19000.2 | Symbols: BPM1 | BTB-POZ and MATH domain 1 | chr5:... 424 1e-117
> AT3G06190.1 | Symbols: ATBPM2, BPM2 | BTB-POZ and MATH domain
2 | chr3:1874291-1876913 REVERSE LENGTH=1845
Length=1845
Score = 2106 bits (1140), Expect = 0.0
Identities = 1222/1262 (97%), Gaps = 3/1262 (0%)
Strand=Plus/Plus
Query 1 TTGGATCTCGTCTTTGTTTGATGGACACAATTAGGGTTTCCACGGAGGTTCCTGGATCTT 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 319 TTGGATCTCGTCTTTGTTTGATGGACACAATTAGGGTTTCCAAGGAGGTTCCTGGATCTT 378
Query 61 CGAAATCGACCTCACAGTCGCTCACGGAGTCGACTTCTCGCACGGAAACCATCAATGGCT 120
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 379 CGAAATCGACCGCACAGTCGCTCACGGAGTCGACCTCTCGCACGGAAACCATCAATGGCT 438
Query 121 CCCACGAATTCAAGATCAGCGGCTACTCTTTGGTCAAAGGGATGGGGATTGGCAAATACG 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 439 CCCACGAATTCAAGATCAGCGGCTACTCTTTGGTCAAAGGCATGGGGATTGGCAAATACG 498
Query 181 TTGCCTCGGATACGTTCATGGTTGGTGGCTACTCTTGGGCGATCTACTTCTACCCAGATG 240
||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||||||||
Sbjct 499 TTGCCTCGGATACTTTCATGGTCGGTGGATACTCCTGGGCCATCTACTTCTACCCAGATG 558
Query 241 GTAAA-AGTCCAGAGGATAATTCTGTGTACGTGTCTCTCTTCATAGCCCTCGCGAGCGAA 299
| ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 559 G-AAAGAGTCCAGAGGATAATTCTGTCTACGTGTCTCTCTTCATAGCCCTTGCGAGTGAA 617
Query 300 GGAGCCGATGTTAGGGCTTTGTTTGAGCTCACCCTCGTGGATCAGAGCGGTAACGAAAGG 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 618 GGAGCCGATGTTAGGGCTTTGTTTGAGCTTACCCTCGTGGATCAGAGCGGTAACGAAAGG 677
Query 360 CACAAGGTTCATAGCCATTTTGGTAGAACTCTAGAAAGCGGACCCTATACTCTTAAATAT 419
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 678 CACAAAGTTCATAGCCATTTTGGTAGAACTCTCGAAAGCGGACCCTATACTCTTAAATAT 737
Query 420 CGAGGAAGTATGTGGGGATACAAACGTTTTTTCAAGAGGTCTCTTTTGGAGTCATCGGAC 479
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 738 CGAGGGAGTATGTGGGGATACAAACGATTTTTCAAGAGGTCTCTTTTGGAGTCATCGGAC 797
Query 480 TATCTGAAGGACAATGGTCTCTTGGTCCGGTGTTGTGTTGGAGTGGTGAAGTCACGCACA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 TATCTGAAGGACAATGGTCTCTTGGTCCGGTGTTGTGTTGGAGTGGTGAAGTCACGCACA 857
Query 540 GAAGGACCAAGGTGTTACAATATCCCGGTGCCGGTTTCTGACTTGGGTCAGCAGTTTGGA 599
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 858 GAAGGACCGAGGTGTTACAATATCCCGGTGCCGGTTTCTGGCTTGGGTCAGCAGTTTGGA 917
Query 600 AAGCTTTTGGAAAGTGGGAAAGGAGCTGATGTTAATTTCAAAGTTGATGGAGAAACATTT 659
||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||
Sbjct 918 AAGCTTTTGGAAAGTGGGAAAGGAGCTGACGTTACTTTCGAAGTTGATGGAGAAACATTT 977
Query 660 CCTGCTCACAAATTGGTTCTTGCAGCACGTTCTGCAGTTTTGAGGGCACAGCTTTTTGGC 719
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 978 CCTGCTCACAAATTGGTTCTTGCAGCACGTTCTGCAGTTTTCAGGGCACAGCTTTTTGGC 1037
Query 720 CCGTTGAGAAGTGAAAATACCAAATGTATAATCATAGAAGACATACAAGCCCCTATTTTC 779
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1038 CCGTTGAGAAGTGAAAATACCAATTGTATAATCATAGAAGACGTACAAGCCCCTATTTTC 1097
Query 780 AAGATGTTGCTCCATTTTATCTACTGGGACGAATTGCCTGATATGCAAGACTTAATGGGC 839
||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| |||
Sbjct 1098 AAGATGTTGCTTCATTTTATCTACTGGGATGAAATGCCTGATATGCAAGACTTAATCGGC 1157
Query 840 ACAGACTTGAAATGGGCATCAACTCTTGTGGCTCAGCATCTGCTTGCAGCTGCAGACCGA 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 ACAGACTTGAAATGGGCATCAACTCTTGTGGCTCAGCATCTGCTTGCAGCTGCAGACCGT 1217
Query 900 TATGCTCTTGAGCGGCTTAGAACAATATGTGAGTCAAAACTCTGTGAAGGAATCAGCATA 959
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1218 TATGCTCTTGAGCGGCTTAGAACAATATGCGAGTCAAAACTCTGTGAAGGAATCAGCATA 1277
Query 960 AATACGGTTGCAACCACCTTGGCTCTTGCTGAGCAGCATCATTGTTTCCAGCTGAAAGCC 1019
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1278 AATACGGTAGCAACCACCTTGGCTCTTGCAGAGCAGCATCATTGTTTCCAGCTGAAAGCC 1337
Query 1020 GCCTGCCTCAAATTTATAGCTTTTCCAGAAAACCTAAAAGCTGTGATGGAAACGGATGGG 1079
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1338 GCCTGCCTCAAATTTATAGCTTTGCCAGAAAACCTGAAAGCTGTGATGGAAACGGATGGG 1397
Query 1080 TTTGATTATCTGAAGGAAAGCTGCCCGTCCCTACTAAGTGAGCTATTGGAGTATGTGGCT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 TTTGATTATCTGAAGGAAAGCTGCCCGTCCCTACTAAGTGAGCTATTGGAGTATGTGGCT 1457
Query 1140 AGGCTGAGTGAGCACTCTTTAACATCATCAGGGCATCGAAAGGAGTTATTTGCTGATGGT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 AGGCTGAGTGAGCACTCTTTAACATCATCAGGGCATCGAAAGGAGTTATTTGCTGATGGT 1517
Query 1200 TGTGACTTAAATGGGAGACGTGTGAAGCAACGGTTACACTAAGCAACTAACTGAGAGAGA 1259
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 1518 TGTGACTTAAATGGGAGACGTGTGAAGCAACGGTTACATTA-GCAACTAATTGAGAGAGA 1576
Query 1260 GA 1261
||
Sbjct 1577 GA 1578
> AT5G19000.2 | Symbols: BPM1 | BTB-POZ and MATH domain 1 | chr5:6342220-6344674
FORWARD LENGTH=1705
Length=1705
Score = 424 bits (229), Expect = 1e-117
Identities = 385/460 (84%), Gaps = 12/460 (3%)
Strand=Plus/Plus
Query 786 TTGCTCCATTTTATCTACTGGGACGAATTGCCTGATATGCAAGACTTAATGGGCACAGAC 845
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1217 TTGCTCCATTTTATCTACTGGGACGAATTGCCTGATATGCAAGAGTTAATAGGAACAGAC 1276
Query 846 T-TGAAATGGGCATCAACTCTTGTGGCTCAGCATCTGCTTGCAGCTGCAGACCGATATGC 904
| | | || ||| || |||||||||||||||||||| || ||||| |||||||| |||||
Sbjct 1277 TCT-ACATTGGCGTCTACTCTTGTGGCTCAGCATCTACTAGCAGCGGCAGACCGTTATGC 1335
Query 905 TCTTGAGCGGCTTAGAA-CAATATGTGAGTCAAAACTCTGTGAAGGAATCAGC-ATAAAT 962
|||||||||||||| || |||| ||||||||||||||||||||||| | || |||||
Sbjct 1336 TCTTGAGCGGCTTA-AAGCAATCTGTGAGTCAAAACTCTGTGAAGGGGTT-GCCATAAAC 1393
Query 963 ACGGTTGCAACCACCTTGGCTCTTGCTGAGCAGCATCATTGTTTCCAGCTGAAAGCCGCC 1022
||||||||||| || ||||| || || ||||||||||||||||| ||||| ||||| |
Sbjct 1394 ACGGTTGCAACTACTTTGGCCCTAGCAGAGCAGCATCATTGTTTGCAGCTAAAAGCAGTG 1453
Query 1023 TGCCTCAAATTTATAGCTTTTCCAGAAAACCTAAAAGCTGTGATGGAAACGGATGGGTTT 1082
|| |||||||| | || | ||||| ||||| |||||||||||| |||| |||||||||
Sbjct 1454 TGTCTCAAATTCGTGGCACTGCCAGAGAACCTGAAAGCTGTGATGCAAACAGATGGGTTT 1513
Query 1083 GATTATCTGAAGGAAAGCTGCCCGTCCCTACTAA-GTGAGCTATTGGAGTATGTGGCTAG 1141
||||||||||| || || ||||| || |||||| | ||||||||| |||||||||| ||
Sbjct 1514 GATTATCTGAAAGAGAGTTGCCCATCTTTACTAACG-GAGCTATTGCAGTATGTGGCGAG 1572
Query 1142 GCTGAGTGAGCACTCT-TTA-ACATCATCAGGGCATCGAAAGGAGTTATTTGCTGATGGT 1199
||| ||||| |||||| ||| | | ||| || |||||||| || ||||||| ||||||
Sbjct 1573 GCTAAGTGAACACTCTGTTATAG-T-ATCTGGACATCGAAAAGAAATATTTGCCGATGGT 1630
Query 1200 TGTGACTTAAATGGGAGACGTGTGAAGCAACGGTTACACT 1239
|||||| | ||| ||||| ||||||| ||||| ||||
Sbjct 1631 TGTGACGCGAGTGGAAGACGAGTGAAGCCCCGGTTGCACT 1670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5